Phylogenetics

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Phylogenetics / Charles Semple and Mike Steel

資料種別:

図書

出版情報:

Oxford : Oxford University Press, 2003

形態:

xiii, 239 p. ; 24 cm

シリーズ名:

Oxford lecture series in mathematics and its applications ; 24 <BA2340416X>

著者名:

ISBN:

9780198509424 [0198509421]

書誌ID:

BA6070391X

子書誌情報

フルテキスト

所蔵情報

他の版・巻

書誌詳細

注記:

Includes bibliographical references (p. [218]-229) and index

主題:

Cladistic analysis--Mathematics; Evolutionary genetics--Mathematics

言語:

英語

目次情報:

Preliminaries

Graphs and their role in biology / 1：

Graphs / 1.1：

Trees and forests / 1.2：

Intersection graphs / 1.3：

Applications of graphs in biology / 1.4：

Exercises / 1.5：

X-trees and phylogenetic trees / 2：

X-trees / 2.1：

Rooted X-trees / 2.2：

Ranked trees and the coalescent process / 2.3：

Tree shapes / 2.4：

Randomly generated trees / 2.5：

Tree rearrangement operations / 2.6：

Reticulate evolution and co-phylogeny / 2.7：

Phylogenetic forests / 2.8：

Trees and splits / 2.9：

Splits-Equivalence Theorem / 3.1：

A partial order on X-trees / 3.2：

Compatibility of X-trees / 3.3：

The splits metric / 3.4：

Hierarchies, clusters, and splits / 3.5：

Consensus trees / 3.6：

Cyclic split systems and weak hierarchies / 3.7：

The Buneman graph / 3.8：

Compatibility of characters / 3.9：

Characters and convexity / 4.1：

Character compatibility (perfect phylogeny) / 4.2：

Strongly compatible characters / 4.3：

Complexity of determining character compatibility / 4.4：

Maximum compatibility / 4.5：

Generalized characters and directional constraints / 4.6：

Defining an X-tree by characters / 4.7：

Maximum parsimony / 4.8：

Classical parsimony / 5.1：

Optimization on a fixed tree / 5.2：

Extensions of classical parsimony / 5.3：

Maximum parsimony trees / 5.4：

Networks of maximum parsimony trees / 5.5：

Combinatorial statistics of parsimony / 5.6：

Subtrees and supertrees / 5.7：

Restricted subtrees / 6.1：

Maximum agreement subtrees / 6.2：

Compatibility of semi-labelled trees / 6.3：

A reconstruction algorithm for rooted trees / 6.4：

Complexity analysis / 6.5：

Supertree methods / 6.6：

Closure and correction operations / 6.7：

Defining a tree by subtrees / 6.8：

Phylogenetic patchworks / 6.9：

Tree-based metrics / 6.10：

Dissimilarity maps and tree metrics / 7.1：

Ultrametrics / 7.2：

Reconstruction methods / 7.3：

Split decomposition theory / 7.4：

Ordinal methods / 7.5：

Group-valued, non-symmetric dissimilarities / 7.6：

Perturbing tree metrics / 7.7：

Markov models on trees / 7.8：

Matrix algebra / 8.1：

Markov processes on trees and graphs / 8.2：

Phylogenetic models of character evolution / 8.3：

Tree reconstruction for the general Markov process / 8.4：

Stationary and reversible models / 8.5：

The Hadamard representation / 8.6：

The 'Felsenstein zone' / 8.7：

Rate variation across characters / 8.8：

Model-based reconstruction methods / 8.9：

Algebraic properties of Markov processes on trees / 8.10：

References / 8.11：

Commonly used symbols

Index

Preliminaries

Graphs and their role in biology / 1：

Graphs / 1.1：

Trees and forests / 1.2：

Intersection graphs / 1.3：

Applications of graphs in biology / 1.4：

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