| Contributors to Volume 409 |
| Volumes in Series |
| Overproduction and Purification of RFC-Related Clamp Loaders and PCNA-Related Clamps from Saccharomyces cerevisiae / Goran O. Bylund ; Jerzy Majka ; Peter M. J. Burgers1： |
| Functional Assays for Replication Protein A (RPA) / Sara K. Binz ; Anne M. Dickson ; Stuart J. Haring ; Marc S. Wold2： |
| Human DNA Ligases I, III, and IV-Purification and New Specific Assays for These Enzymes / Xi Chen ; John Pascal ; Sangeetha Vijayakumar ; Gerald M. Wilson ; Tom Ellenberger ; Alan E. Tomkinson3： |
| Enzymatic Mechanism of the WRN Helicase/Nuclease / Robert M. Brosh, Jr. ; Patricia L. Opresko ; Vilhelm A. Bohr4： |
| Analysis of the DNA Unwinding Activity of RecQ Family Helicases / Csanad Z. Bachrati ; Ian D. Hickson5： |
| Characterization of Checkpoint Responses to DNA Damage in Saccharomyces cerevisiae: Basic Protocols / Ritu Pabla ; Vaibhav Pawar ; Hong Zhang ; Wolfram Siede6： |
| Recruitment of ATR-ATRIP, Rad17, and 9-1-1 Complexes to DNA Damage / Xiaohong Helena Yang ; Lee Zou7： |
| Multiple Approaches to Study S. cerevisiae Rad9, a Prototypical Checkpoint Protein / Aisling M. O'Shaughnessy ; Muriel Grenon ; Chris Gilbert ; Geraldine W.-L. Toh ; Catherine M. Green ; Noel F. Lowndes8： |
| Methods for Studying Adaptation to the DNA Damage Checkpoint in Yeast / David P. Toczyski9： |
| DNA Damage-Induced Phosphorylation of Rad55 Protein as a Sentinel for DNA Damage Checkpoint Activation in S. cervisiae / Vladimir I. Bashkirov ; Kristina Herzberg ; Edwin Haghnazari ; Alexey S. Vlasenko ; Wolf-Dietrich Heyer10： |
| Methods for Studying Mutagenesis and Checkpoints in Schizosaccharomyces pombe / Mihoko Kai ; Lorena Taricani ; Teresa S.-F. Wang11： |
| Methods for Determining Spontaneous Mutation Rates / Patricia L. Foster12： |
| Genomic Approaches for Identifying DNA Damage Response Pathways in S. cerevisiae / Michael Chang ; Ainslie B. Parsons ; Bilal H. Sheikh ; Charles Boone ; Grant W. Brown13： |
| Techniques for [gamma]-H2AX Detection / Asako Nakamura ; Olga A. Sedelnikova ; Christophe Redon ; Duane R. Pilch ; Natasha I. Sinogeeva ; Robert Shroff ; Michael Lichten ; William M. Bonner14： |
| Methods for Studying the Cellular Response to DNA Damage: Influence of the Mre11 Complex on Chromosome Metabolism / Jan-Willem F. Theunissen ; John H. J. Petrini15： |
| Detecting Repair Intermediates In Vivo: Effects of DNA Damage Response Genes on Single-Stranded DNA Accumulation at Uncapped Telomeres in Budding Yeast / Mikhaljlo K. Zubko ; Laura Maringele ; Steven S. Foster ; David Lydall16： |
| Analysis of Non-B DNA Structure at Chromosomal Sites in the Mammalian Genome / Sathees C. Raghavan ; Albert Tsai ; Chih-Lin Hsieh ; Michael R. Lieber17： |
| Detection and Structural Analysis of R-Loops / Kefei Yu ; Deepankar Roy ; Feng-Ting Huang18： |
| The Delitto Perfetto Approach to In Vivo Site-Directed Mutagenesis and Chromosome Rearrangements with Synthetic Oligonucleotides in Yeast / Francesca Storici ; Michael A. Resnick19： |
| Assays for Transcriptional Mutagenesis in Active Genes / Damien Bregeon ; Paul W. Doetsch20： |
| Methods for Studying Chromatin Assembly Coupled to DNA Repair / Annabelle Gerard ; Sophie E. Polo ; Daniele Roche ; Genevieve Almouzni21： |
| Structure-Function Analysis of SWI2/SNF2 Enzymes / Harald Durr ; Karl-Peter Hopfner22： |
| Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior / Yuki Katou ; Kiyofumi Kaneshiro ; Hiroyuki Aburatani ; Katsuhiko Shirahige23： |
| Measurement of Chromosomal DNA Single-Strand Breaks and Replication Fork Progression Rates / Claire Breslin ; Paula M. Clements ; Sherif F. El-Khamisy ; Eva Petermann ; Natasha Iles ; Keith W. Caldecott24： |
| Monitoring DNA Replication Following UV-Induced Damage in Escherichia coli / Charmain T. Courcelle ; Justin Courcelle25： |
| Methods to Study Replication Fork Collapse in Budding Yeast / Giordano Liberi ; Cecilia Cotta-Ramusino ; Massimo Lopes ; Jose' Sogo ; Chiara Conti ; Aaron Bensimon ; Marco Foiani26： |
| Analysis of Gross-Chromosomal Rearrangements in Saccharomyces cerevisiae / Kristina H. Schmidt ; Vincent Pennaneach ; Christopher D. Putnam ; Richard D. Kolodner27： |
| Formation and Processing of Stalled Replication Forks-Utility of Two-Dimensional Agarose Gels / Jennifer Reineke Pohlhaus ; Kenneth N. Kreuzer28： |
| Poly (ADP-Ribose) Polymerase-1 Activation During DNA Damage and Repair / Francoise Dantzer ; Jean-Christopher Ame ; Valerie Schreiber ; Jun Nakamura ; Josiane Menissier-de Murcia ; Gilbert de Murcia29： |
| Tyrosyl-DNA Phosphodiesterase (Tdp1) (3'-Phosphotyrosyl DNA Phosphodiesterase) / Amy C. Raymond ; Alex B. Burgin, Jr.30： |
| Assaying Double-Strand Break Repair Pathway Choice in Mammalian Cells Using a Targeted Endonuclease or the RAG Recombinase / David M. Weinstock ; Koji Nakanishi ; Hildur R. Helgadottir ; Maria Jasin31： |
| Author Index |
| Subject Index |
| Contributors to Volume 408 |
| Assays for Determining Lesion Bypass Efficiency and Mutagenicity of Site-Specific DNA Lesions In Vivo / James C. Delaney ; John M. Essigmann |
| Oxidative DNA Glycosylases: Recipes from Cloning to Characterization / Viswanath Bandaru ; Jeffrey O. Blaisdell ; Susan S. Wallace |
| Purification and Characterization of NEIL1 and NEIL2, Members of a Distinct Family of Mammalian DNA Glycosylases for Repair of Oxidized Bases / Tapas K. Hazra ; Sankar Mitra |
| Analysis of Base Excision DNA Repair of the Oxidative Lesion 2-Deoxyribonolactone and the Formation of DNA-Protein Cross-Links / Jung-Suk Sung ; Bruce Demple |
| Isolation and Analyses of MutY Homologs (MYH) / A-Lien Lu-Chang |
| Use of Yeast for Detection of Endogenous Abasic Lesions, Their Source, and Their Repair / Serge Boiteux ; Marie Guillet |
| Activities and Mechanism of DNA Polymerase [beta] / William A. Beard ; Rajendra Prasad ; Samuel H. Wilson |
| Direct Removal of Alkylation Damage from DNA by AlkB and Related DNA Dioxygenases / Barbara Sedgwick ; Peter Robins ; Tomas Lindahl |
| Purification and Characterization of DNA Photolyases / Gwendolyn B. Sancar ; Aziz Sancar |
| Genetic and In Vitro Assays of DNA Deamination / Heather A. Coker ; Hugh D. Morgan ; Svend K. Petersen-Mahrt |
| The Xeroderma Pigmentosum Group C Protein Complex and Ultraviolet-Damaged DNA-Binding Protein: Functional Assays for Damage Recognition Factors Involved in Global Genome Repair / Kaoru Sugasawa |
| Purification and Characterization of Escherichia coli and Human Nucleotide Excision Repair Enzyme Systems / Joyce T. Reardon |
| Assays for Transcription Elongation by RNA Polymerase II Using Oligo(dC)-Tailed Template with Single DNA Damage / Isao Kuraoka ; Kiyoji Tanaka |
| In Vivo Assays for Transcription-Coupled Repair / Graciela Spivak ; Gerd P. Pfeifer ; Philip Hanawalt |
| TFIIH Enzymatic Activities in Transcription and Nucleotide Excision Repair / Jean-Philippe Laine ; Vincent Mocquet ; Jean-Marc Egly |
| An Assay for Studying Ubiquitylation of RNA Polymerase II and Other Proteins in Crude Yeast Extracts / James Reid ; Jesper Q. Svejstrup |
| Analysis of Excision Step in Human DNA Mismatch Repair / Jochen Genschel ; Paul Modrich |
| Characterization of the "Mismatch Repairosome" and Its Role in the Processing of Modified Nucleosides In Vitro / Katja Baerenfaller ; Franziska Fischer ; Josef Jiricny |
| Analysis of DNA Mismatch Repair in Cellular Response to DNA Damage / Liya Gu ; Guo-Min Li |
| Characterization of Escherichia coli Translesion Synthesis Polymerases and Their Accessory Factors / Penny J. Beuning ; Sharotka M. Simon ; Veronica G. Godoy ; Daniel F. Jarosz ; Graham C. Walker |
| Measuring the Fidelity of Translesion DNA Synthesis / Scott D. McCulloch ; Thomas A. Kunkel |
| DNA Polymerases for Translesion DNA Synthesis: Enzyme Purification and Mouse Models for Studying Their Function / Paula L. Fischhaber ; Lisa D. McDaniel ; Errol C. Friedberg |
| Purification and Characterization of Escherichia coli DNA Polymerase V / Katharina Schlacher ; Qingfei Jiang ; Roger Woodgate ; Myron F. Goodman |
| Yeast and Human Translesion DNA Synthesis Polymerases: Expression, Purification, and Biochemical Characterization / Robert E. Johnson ; Louise Prakash ; Satya Prakash |
| Localization of Y-Family Polymerases and the DNA Polymerase Switch in Mammalian Cells / Patricia Kannouche ; Alan Lehmann |
| Repair of DNA Double Strand Breaks: In Vivo Biochemistry / Neal Sugawara ; James E. Haber |
| Assays for Nonhomologous End Joining in Extracts / Joe Budman ; Gilbert Chu |
| Purification and Assays of Saccharomyces cerevisiae Homologous Recombination Proteins / Stephen Van Komen ; Margaret Macris ; Michael G. Sehorn ; Patrick Sung |
| Analysis of DNA Recombination and Repair Proteins in Living Cells by Photobleaching Microscopy / Jeroen Essers ; Adriaan B. Houtsmuller ; Roland Kanaar |
| Synthetic Junctions as Tools to Identify and Characterize Holliday Junction Resolvases / Ulrich Rass ; Stephen C. West |
| In Vitro Nonhomologous DNA End Joining System / Yunmei Ma |
| RAG and HMGB1 Proteins: Purification and Biochemical Analysis of Recombination Signal Complexes / Serge Bergeron ; Dirk K. Anderson ; Patrick C. Swanson32： |
| Purification and Biochemical Characterization of Ataxia-Telangiectasia Mutated and Mre11/Rad50/Nbs1 / Ji-Hoon Lee ; Tanya T. Paull33： |
| Contributors to Volume 409 |
| Volumes in Series |
| Overproduction and Purification of RFC-Related Clamp Loaders and PCNA-Related Clamps from Saccharomyces cerevisiae / Goran O. Bylund ; Jerzy Majka ; Peter M. J. Burgers1： |
| Functional Assays for Replication Protein A (RPA) / Sara K. Binz ; Anne M. Dickson ; Stuart J. Haring ; Marc S. Wold2： |
| Human DNA Ligases I, III, and IV-Purification and New Specific Assays for These Enzymes / Xi Chen ; John Pascal ; Sangeetha Vijayakumar ; Gerald M. Wilson ; Tom Ellenberger ; Alan E. Tomkinson3： |
| Enzymatic Mechanism of the WRN Helicase/Nuclease / Robert M. Brosh, Jr. ; Patricia L. Opresko ; Vilhelm A. Bohr4： |
