Bioinformatics : high performance parallel computer architectures

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Bioinformatics : high performance parallel computer architectures / edited by Bertil Schmidt

資料種別:: 図書
出版情報:: Boca Raton, Fla. : CRC Press, c2011
形態:: xiv, 356 p ; 25 cm
シリーズ名:: Embedded multi-core systems <BB02578807>
著者名:: Schmidt, Bertil
ISBN:: 9781439814888 [1439814880]
書誌ID:: BB04768097

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注記:

Includes bibliographical references and index

主題:

Bioinformatics--Data processing; Parallel processing (Electronic computers)

言語:

英語

目次情報:

Preface

Editor

Contributors

Algorithms for Bioinformatics / Bertil Schmidt1：

Introduction to GPGPUs and Massively Threaded Programming / Robert M. Farber2：

FPGA: Architecture and Programming / Douglas Maskell3：

Parallel Algorithms for Alignments on the Cell BE / Abhinav Sarje ; Srinivas Aluru4：

Orchestrating the Phylogenetic Likelihood Function on Emerging Parallel Architectures / Alexandros Stamatakis5：

Parallel Bioinformatics Algorithms for CUDA-Enabled GPUs / Yongchao Liu6：

CUDA Error Correction Method for High-Throughput Short-Read Sequencing Data / Haixiang Shi ; Weiguo Liu7：

FPGA Acceleration of Seeded Similarity Searching / Arpith C. Jacob ; Joseph M. Lancaster ; Jeremy D. Buhler ; Roger D. Chamberlain8：

Seed-Based Parallel Protein Sequence Comparison Combining Multithreading, GPU, and FPGA Technologies / Dominique Lavenier ; Van-Hoa Nguyen9：

Database Searching with Profile-Hidden Markov Models on Reconfigurable and Many-Core Architectures / John Paul Walters ; Vipin Chaudhary10：

COPACOBANA: A Massively Parallel FPGA-Based Computer Architecture / Manfred Schimmler ; Lars Wienbrandt ; Tim GÃ¼neysu ; Jost Bissel11：

Accelerating String Set Matching for Bioinformatics Using FPGA Hardware / Yoginder S. Dandass12：

Reconfigurable Neural System and Its Application to Dimeric Protein Binding Site Identification / Feng Lin ; Maria Stepanova13：

Parallel FPGA Search Engine for Protein Identification / Daniel Coca ; Istvan Bogdan ; Robert J, Beynon14：

Index

Preface

Editor

Contributors

Algorithms for Bioinformatics / Bertil Schmidt1：

Introduction to GPGPUs and Massively Threaded Programming / Robert M. Farber2：

FPGA: Architecture and Programming / Douglas Maskell3：

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