Introduction / 1: |
Motivations / 2: |
Examples from Biology / 2.1: |
Asexual propagation / 2.1.1: |
Gametic algebras in asexual inheritance / 2.1.2: |
The Wright-Fisher model / 2.1.3: |
Examples from Physics / 2.2: |
Particles moving in a discrete space / 2.2.1: |
Flows in a discrete space (networks) / 2.2.2: |
Feynman graphs / 2.2.3: |
Examples from Topology / 2.3: |
Motions of particles in a 3-manifold / 2.3.1: |
Random walks on braids with negative probabilities / 2.3.2: |
Examples from Probability Theory / 2.4: |
Stochastic processes / 2.4.1: |
Evolution Algebras / 3: |
Definitions and Basic Properties / 3.1: |
Departure point / 3.1.1: |
Existence of unity elements / 3.1.2: |
Basic definitions / 3.1.3: |
Ideals of an evolution algebra / 3.1.4: |
Quotients of an evolution algebra / 3.1.5: |
Occurrence relations / 3.1.6: |
Several interesting identities / 3.1.7: |
Evolution Operators and Multiplication Algebras / 3.2: |
Evolution operators / 3.2.1: |
Changes of generator sets (Transformations of natural bases) / 3.2.2: |
"Rigidness" of generator sets of an evolution algebra / 3.2.3: |
The automorphism group of an evolution algebra / 3.2.4: |
The multiplication algebra of an evolution algebra / 3.2.5: |
The derived Lie algebra of an evolution algebra / 3.2.6: |
The centroid of an evolution algebra / 3.2.7: |
Nonassociative Banach Algebras / 3.3: |
Definition of a norm over an evolution algebra / 3.3.1: |
An evolution algebra as a Banach space / 3.3.2: |
Periodicity and Algebraic Persistency / 3.4: |
Periodicity of a generator in an evolution algebra / 3.4.1: |
Algebraic persistency and algebraic transiency / 3.4.2: |
Hierarchy of an Evolution Algebra / 3.5: |
Periodicity of a simple evolution algebra / 3.5.1: |
Semidirect-sum decomposition of an evolution algebra / 3.5.2: |
Hierarchy of an evolution algebra / 3.5.3: |
Reducibility of an evolution algebra / 3.5.4: |
Evolution Algebras and Markov Chains / 4: |
A Markov Chain and Its Evolution Algebra / 4.1: |
Markov chains (discrete time) / 4.1.1: |
The evolution algebra determined by a Markov chain / 4.1.2: |
The Chapman-Kolmogorov equation / 4.1.3: |
Concepts related to evolution operators / 4.1.4: |
Basic algebraic properties of Markov chains / 4.1.5: |
Algebraic Persistency and Probabilistic Persistency / 4.2: |
Destination operator of evolution algebra M[subscript X] / 4.2.1: |
On the loss of coefficients (probabilities) / 4.2.2: |
On the conservation of coefficients (probabilities) / 4.2.3: |
Certain interpretations / 4.2.4: |
Algebraic periodicity and probabilistic periodicity / 4.2.5: |
Spectrum Theory of Evolution Algebras / 4.3: |
Invariance of a probability flow / 4.3.1: |
Spectrum of a simple evolution algebra / 4.3.2: |
Spectrum of an evolution algebra at zeroth level / 4.3.3: |
Hierarchies of General Markov Chains and Beyond / 4.4: |
Hierarchy of a general Markov chain / 4.4.1: |
Structure at the 0th level in a hierarchy / 4.4.2: |
1st structure of a hierarchy / 4.4.3: |
kth structure of a hierarchy / 4.4.4: |
Regular evolution algebras / 4.4.5: |
Reduced structure of evolution algebra M[subscript X] / 4.4.6: |
Examples and applications / 4.4.7: |
Evolution Algebras and Non-Mendelian Genetics / 5: |
History of General Genetic Algebras / 5.1: |
Non-Mendelian Genetics and Its Algebraic Formulation / 5.2: |
Some terms in population genetics / 5.2.1: |
Mendelian vs. non-Mendelian genetics / 5.2.2: |
Algebraic formulation of non-Mendelian genetics / 5.2.3: |
Algebras of Organelle Population Genetics / 5.3: |
Heteroplasmy and homoplasmy / 5.3.1: |
Coexistence of triplasmy / 5.3.2: |
Algebraic Structures of Asexual Progenies of Phytophthora infestans / 5.4: |
Basic biology of Phytophthora infestans / 5.4.1: |
Algebras of progenies of Phytophthora infestans / 5.4.2: |
Further Results and Research Topics / 6: |
Beginning of Evolution Algebras and Graph Theory / 6.1: |
Further Research Topics / 6.2: |
Evolution algebras and graph theory / 6.2.1: |
Evolution algebras and group theory, knot theory / 6.2.2: |
Evolution algebras and Ihara-Selberg zeta function / 6.2.3: |
Continuous evolution algebras / 6.2.4: |
Algebraic statistical physics models and applications / 6.2.5: |
Evolution algebras and 3-manifolds / 6.2.6: |
Evolution algebras and phylogenetic trees, coalescent theory / 6.2.7: |
Background Literature / 6.3: |
References |
Index |
Introduction / 1: |
Motivations / 2: |
Examples from Biology / 2.1: |
Asexual propagation / 2.1.1: |
Gametic algebras in asexual inheritance / 2.1.2: |
The Wright-Fisher model / 2.1.3: |