close
1.

電子ブック

EB
Enrique; Packer, Lester Cadenas, Enrique Cadenas, Lester Packer
出版情報: Elsevier ScienceDirect Books , Academic Press, 2010
所蔵情報: loading…
目次情報: 続きを見る
Contributors
Preface
Volumes in Series
Engineering of Fluorescent Reporters into Redox Domains to Monitor Electron Transfers / Derek Parsonage ; Stacy A. Reeves ; P. Andrew Karplus ; Leslie B. Poole1:
Introduction
The Problem: Low Sensitivity and Improperly Rate-Limited Assays for Redox Functions of Bacterial Peroxiredoxin Systems / 2:
The Solution: Engineering of Fluorescent Redox Reporters into the N-Terminal Domain of AhpF and E. coli Grx1 / 3:
Engineering of Disulfide-Containing Electron Acceptor Domains to Detect Electron Transfers via Fluorescence Changes; Linkage of Fluorescein to Bacterial AhpC via a Reducible Disulfide Bond / 4:
Materials / 5:
Methods / 6:
Summary / 7:
References
Blot-Based Detection of Dehydroalanine-Containing Glutathione Peroxidase with the Use of Biotin-Conjugated Cysteamine / Sue Goo Rhee ; Chun-Seok Cho
Oxidative Inactivation of Glutathione Peroxidase and the Conversion of Its Active Site Sec to DHA
Preparation of Biotin-Conjugated Cysteamine
Blot-Based Detection of DHA-GPx1 in RBCs
Effects of Oxidative Stress on the Formation of DHA-GPx1 in RBCs
Concluding Remarks
Acknowledgment
Analysis of the Redox Regulation of Protein Tyrosine Phosphatase Superfamily Members Utilizing a Cysteinyl-Labeling Assay / Benoit Boivin ; Nicholas K. Tonks
Active-Site Structure, Catalysis, and Oxidation
Detection Methods
General Principle of the Assay
Solutions
Preparation of the Lysis Buffer
Preparation of the Hypoxic Glove Box
Preparation of Cell Lysates / 8:
Cysteinyl-Labeling Assay / 9:
Acute Stimulus-Induced Reversible Oxidation of PTPs / 10:
Perspectives / 11:
Conclusion / 12:
Measuring the Redox State of Cellular Peroxiredoxins by Immunoblotting / Andrew G. Cox ; Christine C. Winterbourn ; Mark B. Hampton
Measurement of Prx Dimerization
Measurement of Prx Hyperoxidation
Discussion
Acknowledgments
Thiol Redox Transitions by Thioredoxin and Thioredoxin-Binding Protein-2 in Cell Signaling / Eiji Yoshihara ; Zhe Chen ; Yoshiyuki Matsuo ; Hiroshi Masutani ; Junji Yodoi
Functional Regulation of Redox-Sensitive Proteins by Thiol Modification
Thiol Reduction by the Thioredoxin Redox System
Thioredoxin Superfamily
Reversible Redox and Signal Regulation by Thioredoxin and Thioredoxin-binding Protein-2 (TBP-2)
Detection of Protein Thiols in Mitochondrial Oxidative Phosphorylation Complexes and Associated Proteins / Kelly K. Andringa ; Shannon M. Bailey
Mitochondria Isolation and Protein Thiol Labeling
Application of Blue Native-PAGE for the Isolation of Oxidative Phosphorylation Protein Subunits and Other Proteins Associated with the Complexes
Detection of IBTP-Labeled Protein Thiols in Protein Complexes
Analysis and Mass Spectrometry Identification of Protein
Other Considerations
Mitochondrial Thioredoxin Reductase: Purification, Inhibitor Studies, and Role in Cell Signaling / Maria Pia Rigobello ; Alberto Bindoli
Purification of Thioredoxin Reductase from Isolated Mitochondria, Cultured Cells, and Whole Organs
Estimation of Thioredoxin Reductase Activity
Inhibitor Studies of Thioredoxin Reductase
Role in Cell Signaling
Measuring Mitochondrial Protein Thiol Redox State / Raquel Requejo ; Edward T. Chouchani ; Thomas R. Hurd ; Katja E. Menger ; Michael P. Murphy
Quantification of Mitochondrial Protein Thiols
Quantification of Glutathionylation of Mitochondrial Proteins
Assessment of S-Nitrosated Protein Thiols
Measurement of the Thioredoxin and Peroxiredoxin Redox States
Conclusions
Measurement of Extracellular (Exofacial) Versus Intracellular Protein Thiols / Jolanta Skalska ; Steven Bernstein ; Paul Brookes
Measurement of Mitochondrial Thiol Status
Measurement of Cytosolic Thiol Status
Measurement of Exofacial Thiols
Exofacial Thiol Status and Cancer
Redox Clamp Model for Study of Extracellular Thiols and Disulfides in Redox Signaling / Young-Mi Go ; Dean P. Jones
Key Concepts for Use
Principles for Experimental Design
Summary of Available Redox Clamp Studies
Perspectives and Conclusion
Redox State of Human Serum Albumin in Terms of Cysteine-34 in Health and Disease / Karl Oettl ; Gunther Marsche
Background
HPLC Analysis
Albumin Thiol State and Exercise
Influence of Supplementation
Albumin Oxidation in Disease
Albumin Thiol State During Aging
Methods for Studying Redox Cycling of Thioredoxin in Mediating Preconditioning-Induced Survival Genes and Proteins / Chuang C. Chiueh
Hormetic Mechanism: Role of Redox Cycling of Thioredoxin
Redox Functioning of Thioredoxin
Implications of Preconditioning Protection from Preclinical and Clinical Studies
Drugs Mimic Thioredoxin-Medicated Preconditioning-Induced Signaling and Protection in Cells
Methods and Materials
Oxidative Stress, Thiol Redox Signaling Methods in Epigenetics / Isaac K. Sundar ; Samuel Caito ; Hongwei Yao ; Irfan Rahman13:
Histone Acetylation by Immunoblotting
HAT Activity Assay
HDAC Activity Assay
HDACs Levels by Immunoblotting
Posttranslational Modifications of HDACs and SIRTs (Sirtuins 1-7) by Immunoprecipitation
Preparation of Whole Cell Lysate
Preparation of Cytoplasmic and Nuclear Proteins
Redox-Mediated Posttranslational Modification Assays
Chromatin Immunoprecipitation (ChIP) Assay
Characterization of Protein Targets of Mammalian Thioredoxin Reductases / Anton A. Turanov ; Dolph L. Hatfield ; Vadim N. Gladyshev14:
Preparation of TR-immobilized Affinity Resins
Identification of Targets of Mammalian TRs in Cell Lysates
Concluding Remarks and Future Perspectives
Alteration of Thioredoxin Reductase 1 Levels in Elucidating Cancer Etiology / Min-Hyuk Yoo ; Bradley A. Carlson ; Petra Tsuji ; Robert Irons15:
Materials and Methods
Results and Discussion
Conclusions and Future Perspectives
Regulation of Apoptosis Signal-Regulating Kinase 1 in Redox Signaling / Kazumi Katagiri ; Atsushi Matsuzawa ; Hidenori Ichijo16:
Overview
Comment
Protocols for the Detection of S-Glutathionylated and S-Nitrosylated Proteins In Situ / Scott W. Aesif ; Yvonne M. W. Janssen-Heininger ; Niki L. Reynaert17:
Protein S-Glutathionylation
Protein S-Nitrosylation
Synthesis, Quantification, Characterization, and Signaling Properties of Glutathionyl Conjugates of Enals / Sanjay Srivastava ; Kota V. Ramana ; Aruni Bhatnagar ; Satish K. Srivastava18:
Synthesis, Quantification, and Characterization of Reagent Glutathionyl Conjugates of HNE
Metabolism of HNE
Signaling Properties of Glutathionyl Conjugates of HNE
Thioredoxin and Redox Signaling in Vasculature-Studies Using Trx2 Endothelium-Specific Transgenic Mice / Wang Min ; Luyao (Kevin) Xu ; Huanjiao (Jenny) Zhou ; Qunhua Huang ; Haifeng Zhang ; Yun He ; Xu Zhe ; Yan Luo19:
Author Index
Subject Index
Contributors
Preface
Volumes in Series
2.

電子ブック

EB
Enrique; Packer, Lester Cadenas, Enrique Cadenas, Lester Packer
出版情報: Elsevier ScienceDirect Books , Academic Press, 2010
所蔵情報: loading…
目次情報: 続きを見る
Contributors
Preface
Volumes in Series
Changing Paradigms in Thiology: From Antioxidant Defense Toward Redox Regulation / Leopold Flohé1:
Introduction
Early Concepts, Misconceptions, Unsettled Battles, and Persistent Confusion / 2:
The Discovery of "Natural" Free Radicals / 3:
Love Affairs Between Hydroperoxides and Thiolates or Selenolates / 4:
Toward Regulatory Circuits with Puzzle Stones from Redox Biochemistry / 5:
Conclusions and Perspectives / 6:
References
Mass Spectrometry-Based Methods for the Determination of Sulfur and Related Metabolite Concentrations in Cell Extracts / Emmanuel Godat ; Geoffrey Madalinski ; Ludovic Muller ; Jean-François Heilier ; Jean Labarre ; Christophe Junot
Analytical Methods for the Determination of Sulfur and Amino Acid Metabolites
Procedures
Absolute LC-ESI-MS/MS Quantification of Thiol and Amino Acid Metabolites in Yeast Extracts
Qualitative and Quantitative Determination of Thiol and Amino Acid Metabolites in Yeast Extracts by Using an LTQ-Orbitrap Mass Spectrometer
Discussion
Summary / 7:
Acknowledgments
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Evaluation of Conditions Affecting Probe Incorporation into Redox-Sensitive Proteins / Chananat Klomsiri ; Kimberly J. Nelson ; Erika Bechtold ; Laura Soito ; Lynnette C. Johnson ; W. Todd Lowther ; Seong-Eon Ryu ; S. Bruce King ; Cristina M. Furdui ; Leslie B. Poole
Materials
Methods
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Methods to Visualize and Identify Labeled Proteins / Simona G. Codreanu ; Daniel C. Liebler ; LeAnn C. Rogers ; Larry W. Daniel
Biotin-Based Affinity Capture to Identify Proteins Containing Cysteine Sulfenic Acids
Detection Methods to Identify Oxidized Proteins and Cysteines
Formation and Reactions of Sulfenic Acid in Human Serum Albumin / Beatriz Alvarez ; Sebastián Carballal ; Lucía Turell ; Rafael Radi
Preparation of Albumin Solutions
Preparation of Oxidized Albumin
Detection of Albumin Sulfenic Acid
Quantification of Albumin Sulfenic Acid Using Thionitrobenzoate (TNB)
Reactivity of Sulfenic Acid
Detection of Albumin Sulfinic Acid
Conclusions / 8:
Determination of GSH, GSSG, and GSNO Using HPLC with Electrochemical Detection / Li-Peng Yap ; Harsh Sancheti ; Maria D. Ybanez ; Jerome Garcia ; Enrique Cadenas ; Derick Han
Measurement of Mixed Disulfides Including Glutathionylated Proteins / Raffaella Priora ; Lucia Coppo ; Sonia Salzano ; Paolo Di Simplicio ; Pietro Ghezzi
Chemical Quantification of PSSX, PSSG, and PSSC
Visualization of PSSG by Western Blot
Detection and Quantification of Protein Disulfides in Biological Tissues: A Fluorescence-Based Proteomic Approach / Viviana I. Pérez ; Anson Pierce ; Eric M. de Waal ; Walter F. Ward ; Alex Bokov ; Asish Chaudhuri ; Arlan Richardson
Material and Methods
Results
Measurement and Identification of S-Glutathiolated Proteins / Bradford G. Hill ; Kota V. Ramana ; Jian Cai ; Aruni Bhatnagar ; Satish K. Srivastava9:
Chemical Methods for the Measurement of Glutathiolated Proteins
Detection of Glutathiolated Proteins by ESI/MS
Identification of S-Glutathiolated Proteins in Cells and Tissues
Acknowledgment
Proteome Screens for Cys Residues Oxidation: The Redoxome / Giovanni Chiappetta ; Sega Ndiaye ; Aeid lgbaria ; Chitranshu Kumar ; Joelle Vinh ; Michel B. Toledano10:
General Considerations
Overview of the Different Methods
Results and Discussion
Identification by MS/MS of Disulfides Produced by a Functional Redox Transition / Pierluigi Mauri ; Stefano Toppo ; Antonella De Palma ; Louise Benazzi ; Matilde Maiorino ; Fulvio Ursini11:
MS/MS Identification of Redox-Switches in Protein
Analytical Procedure
Mass Spectrometry Approaches for the Redox Characterization of Protein Cysteine Residues: The Case of the Transcription Factor Pax-8 / Andrea Scaloni ; Gianluca Tell12:
Materials and Methods
Conclusions and Future Perspectives
A Simple Method to Systematically Study Oxidatively Modified Proteins in Biological Samples and Its Applications / Byoung-Joon Song ; Soo-Kyung Suh ; Kwan-Hoon Moon13:
Direct and Indirect Detection Methods for the Analysis of S-Nitrosylated Peptides and Proteins / Federico Torta ; Lisa Elviri ; Angela Bachi14:
Indirect Detection of S-Nitrosylated Proteins: His-tag Switch
Direct Analysis of S-Nitrosylation by MS
A Rapid Approach for the Detection, Quantification, and Discovery of Novel Sulfenic Acid or S-Nitrosothiol Modified Proteins Using a Biotin-Switch Method / Joseph R. Burgoyne ; Philip Eaton15:
Overview of Analytical Strategy
Protein Adducts of Aldehydic Lipid Peroxidation Products: Identification and Characterization of Protein Adducts Using an Aldehyde/Keto-Reactive Probe in Combination with Mass Spectrometry / Claudia S. Maier ; Juan Chavez ; Jing Wang ; Jianyong Wu16:
Modification of Proteins by Aldehydic Lipid Peroxidation Products
Redox Proteomics of Protein Targets of Reactive Lipid Peroxidation Products
Mass Spectrometry-Based Approaches for the Identification and Characterization of Protein Adducts of Aldehydic Lipid Peroxidation Products
Experimental Strategy of Using an Aldehyde/Keto-Reactive Probe for the Targeted Analysis of Protein Adducts of Aldehydic Lipid Peroxidation Products
Applications of the ARP-Labeling Strategy
Interpretation of MS/MS Spectra of Protein Adducts and the Use of Diagnostic Marker Ions
Conclusion
Author Index
Subject Index
Contributors
Preface
Volumes in Series
3.

図書

図書
edited by Enrique Cadenas and Lester Packer
出版情報: San Diego, Calif. ; Tokyo : Academic Press, 2010  xlviii, 359 p., [2] p. of plates ; 24 cm
シリーズ名: Methods in enzymology / editors in chief, Sidney P. Colowick, Nathan O. Kaplan ; v. 473 . Thiol redox transitions in cell signaling ; pt. A
所蔵情報: loading…
目次情報: 続きを見る
Contributors
Preface
Volumes in Series
Changing Paradigms in Thiology: From Antioxidant Defense Toward Redox Regulation / Leopold Flohé1:
Introduction
Early Concepts, Misconceptions, Unsettled Battles, and Persistent Confusion / 2:
The Discovery of "Natural" Free Radicals / 3:
Love Affairs Between Hydroperoxides and Thiolates or Selenolates / 4:
Toward Regulatory Circuits with Puzzle Stones from Redox Biochemistry / 5:
Conclusions and Perspectives / 6:
References
Mass Spectrometry-Based Methods for the Determination of Sulfur and Related Metabolite Concentrations in Cell Extracts / Emmanuel Godat ; Geoffrey Madalinski ; Ludovic Muller ; Jean-François Heilier ; Jean Labarre ; Christophe Junot
Analytical Methods for the Determination of Sulfur and Amino Acid Metabolites
Procedures
Absolute LC-ESI-MS/MS Quantification of Thiol and Amino Acid Metabolites in Yeast Extracts
Qualitative and Quantitative Determination of Thiol and Amino Acid Metabolites in Yeast Extracts by Using an LTQ-Orbitrap Mass Spectrometer
Discussion
Summary / 7:
Acknowledgments
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Evaluation of Conditions Affecting Probe Incorporation into Redox-Sensitive Proteins / Chananat Klomsiri ; Kimberly J. Nelson ; Erika Bechtold ; Laura Soito ; Lynnette C. Johnson ; W. Todd Lowther ; Seong-Eon Ryu ; S. Bruce King ; Cristina M. Furdui ; Leslie B. Poole
Materials
Methods
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Methods to Visualize and Identify Labeled Proteins / Simona G. Codreanu ; Daniel C. Liebler ; LeAnn C. Rogers ; Larry W. Daniel
Biotin-Based Affinity Capture to Identify Proteins Containing Cysteine Sulfenic Acids
Detection Methods to Identify Oxidized Proteins and Cysteines
Formation and Reactions of Sulfenic Acid in Human Serum Albumin / Beatriz Alvarez ; Sebastián Carballal ; Lucía Turell ; Rafael Radi
Preparation of Albumin Solutions
Preparation of Oxidized Albumin
Detection of Albumin Sulfenic Acid
Quantification of Albumin Sulfenic Acid Using Thionitrobenzoate (TNB)
Reactivity of Sulfenic Acid
Detection of Albumin Sulfinic Acid
Conclusions / 8:
Determination of GSH, GSSG, and GSNO Using HPLC with Electrochemical Detection / Li-Peng Yap ; Harsh Sancheti ; Maria D. Ybanez ; Jerome Garcia ; Enrique Cadenas ; Derick Han
Measurement of Mixed Disulfides Including Glutathionylated Proteins / Raffaella Priora ; Lucia Coppo ; Sonia Salzano ; Paolo Di Simplicio ; Pietro Ghezzi
Chemical Quantification of PSSX, PSSG, and PSSC
Visualization of PSSG by Western Blot
Detection and Quantification of Protein Disulfides in Biological Tissues: A Fluorescence-Based Proteomic Approach / Viviana I. Pérez ; Anson Pierce ; Eric M. de Waal ; Walter F. Ward ; Alex Bokov ; Asish Chaudhuri ; Arlan Richardson
Material and Methods
Results
Measurement and Identification of S-Glutathiolated Proteins / Bradford G. Hill ; Kota V. Ramana ; Jian Cai ; Aruni Bhatnagar ; Satish K. Srivastava9:
Chemical Methods for the Measurement of Glutathiolated Proteins
Detection of Glutathiolated Proteins by ESI/MS
Identification of S-Glutathiolated Proteins in Cells and Tissues
Acknowledgment
Proteome Screens for Cys Residues Oxidation: The Redoxome / Giovanni Chiappetta ; Sega Ndiaye ; Aeid lgbaria ; Chitranshu Kumar ; Joelle Vinh ; Michel B. Toledano10:
General Considerations
Overview of the Different Methods
Results and Discussion
Identification by MS/MS of Disulfides Produced by a Functional Redox Transition / Pierluigi Mauri ; Stefano Toppo ; Antonella De Palma ; Louise Benazzi ; Matilde Maiorino ; Fulvio Ursini11:
MS/MS Identification of Redox-Switches in Protein
Analytical Procedure
Mass Spectrometry Approaches for the Redox Characterization of Protein Cysteine Residues: The Case of the Transcription Factor Pax-8 / Andrea Scaloni ; Gianluca Tell12:
Materials and Methods
Conclusions and Future Perspectives
A Simple Method to Systematically Study Oxidatively Modified Proteins in Biological Samples and Its Applications / Byoung-Joon Song ; Soo-Kyung Suh ; Kwan-Hoon Moon13:
Direct and Indirect Detection Methods for the Analysis of S-Nitrosylated Peptides and Proteins / Federico Torta ; Lisa Elviri ; Angela Bachi14:
Indirect Detection of S-Nitrosylated Proteins: His-tag Switch
Direct Analysis of S-Nitrosylation by MS
A Rapid Approach for the Detection, Quantification, and Discovery of Novel Sulfenic Acid or S-Nitrosothiol Modified Proteins Using a Biotin-Switch Method / Joseph R. Burgoyne ; Philip Eaton15:
Overview of Analytical Strategy
Protein Adducts of Aldehydic Lipid Peroxidation Products: Identification and Characterization of Protein Adducts Using an Aldehyde/Keto-Reactive Probe in Combination with Mass Spectrometry / Claudia S. Maier ; Juan Chavez ; Jing Wang ; Jianyong Wu16:
Modification of Proteins by Aldehydic Lipid Peroxidation Products
Redox Proteomics of Protein Targets of Reactive Lipid Peroxidation Products
Mass Spectrometry-Based Approaches for the Identification and Characterization of Protein Adducts of Aldehydic Lipid Peroxidation Products
Experimental Strategy of Using an Aldehyde/Keto-Reactive Probe for the Targeted Analysis of Protein Adducts of Aldehydic Lipid Peroxidation Products
Applications of the ARP-Labeling Strategy
Interpretation of MS/MS Spectra of Protein Adducts and the Use of Diagnostic Marker Ions
Conclusion
Author Index
Subject Index
Contributors
Preface
Volumes in Series
4.

図書

図書
edited by Enrique Cadenas and Lester Packer
出版情報: Amsterdam ; Tokyo : Academic Press, 2010  xlviii, 340 p. ; 24 cm
シリーズ名: Methods in enzymology / editors in chief, Sidney P. Colowick, Nathan O. Kaplan ; v. 474 . Thiol redox transitions in cell signaling ; pt. B
所蔵情報: loading…
目次情報: 続きを見る
Contributors
Preface
Volumes in Series
Engineering of Fluorescent Reporters into Redox Domains to Monitor Electron Transfers / Derek Parsonage ; Stacy A. Reeves ; P. Andrew Karplus ; Leslie B. Poole1:
Introduction
The Problem: Low Sensitivity and Improperly Rate-Limited Assays for Redox Functions of Bacterial Peroxiredoxin Systems / 2:
The Solution: Engineering of Fluorescent Redox Reporters into the N-Terminal Domain of AhpF and E. coli Grx1 / 3:
Engineering of Disulfide-Containing Electron Acceptor Domains to Detect Electron Transfers via Fluorescence Changes; Linkage of Fluorescein to Bacterial AhpC via a Reducible Disulfide Bond / 4:
Materials / 5:
Methods / 6:
Summary / 7:
References
Blot-Based Detection of Dehydroalanine-Containing Glutathione Peroxidase with the Use of Biotin-Conjugated Cysteamine / Sue Goo Rhee ; Chun-Seok Cho
Oxidative Inactivation of Glutathione Peroxidase and the Conversion of Its Active Site Sec to DHA
Preparation of Biotin-Conjugated Cysteamine
Blot-Based Detection of DHA-GPx1 in RBCs
Effects of Oxidative Stress on the Formation of DHA-GPx1 in RBCs
Concluding Remarks
Acknowledgment
Analysis of the Redox Regulation of Protein Tyrosine Phosphatase Superfamily Members Utilizing a Cysteinyl-Labeling Assay / Benoit Boivin ; Nicholas K. Tonks
Active-Site Structure, Catalysis, and Oxidation
Detection Methods
General Principle of the Assay
Solutions
Preparation of the Lysis Buffer
Preparation of the Hypoxic Glove Box
Preparation of Cell Lysates / 8:
Cysteinyl-Labeling Assay / 9:
Acute Stimulus-Induced Reversible Oxidation of PTPs / 10:
Perspectives / 11:
Conclusion / 12:
Measuring the Redox State of Cellular Peroxiredoxins by Immunoblotting / Andrew G. Cox ; Christine C. Winterbourn ; Mark B. Hampton
Measurement of Prx Dimerization
Measurement of Prx Hyperoxidation
Discussion
Acknowledgments
Thiol Redox Transitions by Thioredoxin and Thioredoxin-Binding Protein-2 in Cell Signaling / Eiji Yoshihara ; Zhe Chen ; Yoshiyuki Matsuo ; Hiroshi Masutani ; Junji Yodoi
Functional Regulation of Redox-Sensitive Proteins by Thiol Modification
Thiol Reduction by the Thioredoxin Redox System
Thioredoxin Superfamily
Reversible Redox and Signal Regulation by Thioredoxin and Thioredoxin-binding Protein-2 (TBP-2)
Detection of Protein Thiols in Mitochondrial Oxidative Phosphorylation Complexes and Associated Proteins / Kelly K. Andringa ; Shannon M. Bailey
Mitochondria Isolation and Protein Thiol Labeling
Application of Blue Native-PAGE for the Isolation of Oxidative Phosphorylation Protein Subunits and Other Proteins Associated with the Complexes
Detection of IBTP-Labeled Protein Thiols in Protein Complexes
Analysis and Mass Spectrometry Identification of Protein
Other Considerations
Mitochondrial Thioredoxin Reductase: Purification, Inhibitor Studies, and Role in Cell Signaling / Maria Pia Rigobello ; Alberto Bindoli
Purification of Thioredoxin Reductase from Isolated Mitochondria, Cultured Cells, and Whole Organs
Estimation of Thioredoxin Reductase Activity
Inhibitor Studies of Thioredoxin Reductase
Role in Cell Signaling
Measuring Mitochondrial Protein Thiol Redox State / Raquel Requejo ; Edward T. Chouchani ; Thomas R. Hurd ; Katja E. Menger ; Michael P. Murphy
Quantification of Mitochondrial Protein Thiols
Quantification of Glutathionylation of Mitochondrial Proteins
Assessment of S-Nitrosated Protein Thiols
Measurement of the Thioredoxin and Peroxiredoxin Redox States
Conclusions
Measurement of Extracellular (Exofacial) Versus Intracellular Protein Thiols / Jolanta Skalska ; Steven Bernstein ; Paul Brookes
Measurement of Mitochondrial Thiol Status
Measurement of Cytosolic Thiol Status
Measurement of Exofacial Thiols
Exofacial Thiol Status and Cancer
Redox Clamp Model for Study of Extracellular Thiols and Disulfides in Redox Signaling / Young-Mi Go ; Dean P. Jones
Key Concepts for Use
Principles for Experimental Design
Summary of Available Redox Clamp Studies
Perspectives and Conclusion
Redox State of Human Serum Albumin in Terms of Cysteine-34 in Health and Disease / Karl Oettl ; Gunther Marsche
Background
HPLC Analysis
Albumin Thiol State and Exercise
Influence of Supplementation
Albumin Oxidation in Disease
Albumin Thiol State During Aging
Methods for Studying Redox Cycling of Thioredoxin in Mediating Preconditioning-Induced Survival Genes and Proteins / Chuang C. Chiueh
Hormetic Mechanism: Role of Redox Cycling of Thioredoxin
Redox Functioning of Thioredoxin
Implications of Preconditioning Protection from Preclinical and Clinical Studies
Drugs Mimic Thioredoxin-Medicated Preconditioning-Induced Signaling and Protection in Cells
Methods and Materials
Oxidative Stress, Thiol Redox Signaling Methods in Epigenetics / Isaac K. Sundar ; Samuel Caito ; Hongwei Yao ; Irfan Rahman13:
Histone Acetylation by Immunoblotting
HAT Activity Assay
HDAC Activity Assay
HDACs Levels by Immunoblotting
Posttranslational Modifications of HDACs and SIRTs (Sirtuins 1-7) by Immunoprecipitation
Preparation of Whole Cell Lysate
Preparation of Cytoplasmic and Nuclear Proteins
Redox-Mediated Posttranslational Modification Assays
Chromatin Immunoprecipitation (ChIP) Assay
Characterization of Protein Targets of Mammalian Thioredoxin Reductases / Anton A. Turanov ; Dolph L. Hatfield ; Vadim N. Gladyshev14:
Preparation of TR-immobilized Affinity Resins
Identification of Targets of Mammalian TRs in Cell Lysates
Concluding Remarks and Future Perspectives
Alteration of Thioredoxin Reductase 1 Levels in Elucidating Cancer Etiology / Min-Hyuk Yoo ; Bradley A. Carlson ; Petra Tsuji ; Robert Irons15:
Materials and Methods
Results and Discussion
Conclusions and Future Perspectives
Regulation of Apoptosis Signal-Regulating Kinase 1 in Redox Signaling / Kazumi Katagiri ; Atsushi Matsuzawa ; Hidenori Ichijo16:
Overview
Comment
Protocols for the Detection of S-Glutathionylated and S-Nitrosylated Proteins In Situ / Scott W. Aesif ; Yvonne M. W. Janssen-Heininger ; Niki L. Reynaert17:
Protein S-Glutathionylation
Protein S-Nitrosylation
Synthesis, Quantification, Characterization, and Signaling Properties of Glutathionyl Conjugates of Enals / Sanjay Srivastava ; Kota V. Ramana ; Aruni Bhatnagar ; Satish K. Srivastava18:
Synthesis, Quantification, and Characterization of Reagent Glutathionyl Conjugates of HNE
Metabolism of HNE
Signaling Properties of Glutathionyl Conjugates of HNE
Thioredoxin and Redox Signaling in Vasculature-Studies Using Trx2 Endothelium-Specific Transgenic Mice / Wang Min ; Luyao (Kevin) Xu ; Huanjiao (Jenny) Zhou ; Qunhua Huang ; Haifeng Zhang ; Yun He ; Xu Zhe ; Yan Luo19:
Author Index
Subject Index
Contributors
Preface
Volumes in Series
5.

電子ブック

EB
Enrique; Packer, Lester Cadenas, Enrique Cadenas, Lester Packer
出版情報: Elsevier ScienceDirect Books Complete , Academic Press, 2010
所蔵情報: loading…
目次情報: 続きを見る
Contributors
Preface
Volumes in Series
Engineering of Fluorescent Reporters into Redox Domains to Monitor Electron Transfers / Derek Parsonage ; Stacy A. Reeves ; P. Andrew Karplus ; Leslie B. Poole1:
Introduction
The Problem: Low Sensitivity and Improperly Rate-Limited Assays for Redox Functions of Bacterial Peroxiredoxin Systems / 2:
The Solution: Engineering of Fluorescent Redox Reporters into the N-Terminal Domain of AhpF and E. coli Grx1 / 3:
Engineering of Disulfide-Containing Electron Acceptor Domains to Detect Electron Transfers via Fluorescence Changes; Linkage of Fluorescein to Bacterial AhpC via a Reducible Disulfide Bond / 4:
Materials / 5:
Methods / 6:
Summary / 7:
References
Blot-Based Detection of Dehydroalanine-Containing Glutathione Peroxidase with the Use of Biotin-Conjugated Cysteamine / Sue Goo Rhee ; Chun-Seok Cho
Oxidative Inactivation of Glutathione Peroxidase and the Conversion of Its Active Site Sec to DHA
Preparation of Biotin-Conjugated Cysteamine
Blot-Based Detection of DHA-GPx1 in RBCs
Effects of Oxidative Stress on the Formation of DHA-GPx1 in RBCs
Concluding Remarks
Acknowledgment
Analysis of the Redox Regulation of Protein Tyrosine Phosphatase Superfamily Members Utilizing a Cysteinyl-Labeling Assay / Benoit Boivin ; Nicholas K. Tonks
Active-Site Structure, Catalysis, and Oxidation
Detection Methods
General Principle of the Assay
Solutions
Preparation of the Lysis Buffer
Preparation of the Hypoxic Glove Box
Preparation of Cell Lysates / 8:
Cysteinyl-Labeling Assay / 9:
Acute Stimulus-Induced Reversible Oxidation of PTPs / 10:
Perspectives / 11:
Conclusion / 12:
Measuring the Redox State of Cellular Peroxiredoxins by Immunoblotting / Andrew G. Cox ; Christine C. Winterbourn ; Mark B. Hampton
Measurement of Prx Dimerization
Measurement of Prx Hyperoxidation
Discussion
Acknowledgments
Thiol Redox Transitions by Thioredoxin and Thioredoxin-Binding Protein-2 in Cell Signaling / Eiji Yoshihara ; Zhe Chen ; Yoshiyuki Matsuo ; Hiroshi Masutani ; Junji Yodoi
Functional Regulation of Redox-Sensitive Proteins by Thiol Modification
Thiol Reduction by the Thioredoxin Redox System
Thioredoxin Superfamily
Reversible Redox and Signal Regulation by Thioredoxin and Thioredoxin-binding Protein-2 (TBP-2)
Detection of Protein Thiols in Mitochondrial Oxidative Phosphorylation Complexes and Associated Proteins / Kelly K. Andringa ; Shannon M. Bailey
Mitochondria Isolation and Protein Thiol Labeling
Application of Blue Native-PAGE for the Isolation of Oxidative Phosphorylation Protein Subunits and Other Proteins Associated with the Complexes
Detection of IBTP-Labeled Protein Thiols in Protein Complexes
Analysis and Mass Spectrometry Identification of Protein
Other Considerations
Mitochondrial Thioredoxin Reductase: Purification, Inhibitor Studies, and Role in Cell Signaling / Maria Pia Rigobello ; Alberto Bindoli
Purification of Thioredoxin Reductase from Isolated Mitochondria, Cultured Cells, and Whole Organs
Estimation of Thioredoxin Reductase Activity
Inhibitor Studies of Thioredoxin Reductase
Role in Cell Signaling
Measuring Mitochondrial Protein Thiol Redox State / Raquel Requejo ; Edward T. Chouchani ; Thomas R. Hurd ; Katja E. Menger ; Michael P. Murphy
Quantification of Mitochondrial Protein Thiols
Quantification of Glutathionylation of Mitochondrial Proteins
Assessment of S-Nitrosated Protein Thiols
Measurement of the Thioredoxin and Peroxiredoxin Redox States
Conclusions
Measurement of Extracellular (Exofacial) Versus Intracellular Protein Thiols / Jolanta Skalska ; Steven Bernstein ; Paul Brookes
Measurement of Mitochondrial Thiol Status
Measurement of Cytosolic Thiol Status
Measurement of Exofacial Thiols
Exofacial Thiol Status and Cancer
Redox Clamp Model for Study of Extracellular Thiols and Disulfides in Redox Signaling / Young-Mi Go ; Dean P. Jones
Key Concepts for Use
Principles for Experimental Design
Summary of Available Redox Clamp Studies
Perspectives and Conclusion
Redox State of Human Serum Albumin in Terms of Cysteine-34 in Health and Disease / Karl Oettl ; Gunther Marsche
Background
HPLC Analysis
Albumin Thiol State and Exercise
Influence of Supplementation
Albumin Oxidation in Disease
Albumin Thiol State During Aging
Methods for Studying Redox Cycling of Thioredoxin in Mediating Preconditioning-Induced Survival Genes and Proteins / Chuang C. Chiueh
Hormetic Mechanism: Role of Redox Cycling of Thioredoxin
Redox Functioning of Thioredoxin
Implications of Preconditioning Protection from Preclinical and Clinical Studies
Drugs Mimic Thioredoxin-Medicated Preconditioning-Induced Signaling and Protection in Cells
Methods and Materials
Oxidative Stress, Thiol Redox Signaling Methods in Epigenetics / Isaac K. Sundar ; Samuel Caito ; Hongwei Yao ; Irfan Rahman13:
Histone Acetylation by Immunoblotting
HAT Activity Assay
HDAC Activity Assay
HDACs Levels by Immunoblotting
Posttranslational Modifications of HDACs and SIRTs (Sirtuins 1-7) by Immunoprecipitation
Preparation of Whole Cell Lysate
Preparation of Cytoplasmic and Nuclear Proteins
Redox-Mediated Posttranslational Modification Assays
Chromatin Immunoprecipitation (ChIP) Assay
Characterization of Protein Targets of Mammalian Thioredoxin Reductases / Anton A. Turanov ; Dolph L. Hatfield ; Vadim N. Gladyshev14:
Preparation of TR-immobilized Affinity Resins
Identification of Targets of Mammalian TRs in Cell Lysates
Concluding Remarks and Future Perspectives
Alteration of Thioredoxin Reductase 1 Levels in Elucidating Cancer Etiology / Min-Hyuk Yoo ; Bradley A. Carlson ; Petra Tsuji ; Robert Irons15:
Materials and Methods
Results and Discussion
Conclusions and Future Perspectives
Regulation of Apoptosis Signal-Regulating Kinase 1 in Redox Signaling / Kazumi Katagiri ; Atsushi Matsuzawa ; Hidenori Ichijo16:
Overview
Comment
Protocols for the Detection of S-Glutathionylated and S-Nitrosylated Proteins In Situ / Scott W. Aesif ; Yvonne M. W. Janssen-Heininger ; Niki L. Reynaert17:
Protein S-Glutathionylation
Protein S-Nitrosylation
Synthesis, Quantification, Characterization, and Signaling Properties of Glutathionyl Conjugates of Enals / Sanjay Srivastava ; Kota V. Ramana ; Aruni Bhatnagar ; Satish K. Srivastava18:
Synthesis, Quantification, and Characterization of Reagent Glutathionyl Conjugates of HNE
Metabolism of HNE
Signaling Properties of Glutathionyl Conjugates of HNE
Thioredoxin and Redox Signaling in Vasculature-Studies Using Trx2 Endothelium-Specific Transgenic Mice / Wang Min ; Luyao (Kevin) Xu ; Huanjiao (Jenny) Zhou ; Qunhua Huang ; Haifeng Zhang ; Yun He ; Xu Zhe ; Yan Luo19:
Author Index
Subject Index
Contributors
Preface
Volumes in Series
6.

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EB
Enrique; Packer, Lester Cadenas, Enrique Cadenas, Lester Packer
出版情報: Elsevier ScienceDirect Books Complete , Academic Press, 2010
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Contributors
Preface
Volumes in Series
Changing Paradigms in Thiology: From Antioxidant Defense Toward Redox Regulation / Leopold Flohé1:
Introduction
Early Concepts, Misconceptions, Unsettled Battles, and Persistent Confusion / 2:
The Discovery of "Natural" Free Radicals / 3:
Love Affairs Between Hydroperoxides and Thiolates or Selenolates / 4:
Toward Regulatory Circuits with Puzzle Stones from Redox Biochemistry / 5:
Conclusions and Perspectives / 6:
References
Mass Spectrometry-Based Methods for the Determination of Sulfur and Related Metabolite Concentrations in Cell Extracts / Emmanuel Godat ; Geoffrey Madalinski ; Ludovic Muller ; Jean-François Heilier ; Jean Labarre ; Christophe Junot
Analytical Methods for the Determination of Sulfur and Amino Acid Metabolites
Procedures
Absolute LC-ESI-MS/MS Quantification of Thiol and Amino Acid Metabolites in Yeast Extracts
Qualitative and Quantitative Determination of Thiol and Amino Acid Metabolites in Yeast Extracts by Using an LTQ-Orbitrap Mass Spectrometer
Discussion
Summary / 7:
Acknowledgments
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Evaluation of Conditions Affecting Probe Incorporation into Redox-Sensitive Proteins / Chananat Klomsiri ; Kimberly J. Nelson ; Erika Bechtold ; Laura Soito ; Lynnette C. Johnson ; W. Todd Lowther ; Seong-Eon Ryu ; S. Bruce King ; Cristina M. Furdui ; Leslie B. Poole
Materials
Methods
Use of Dimedone-Based Chemical Probes for Sulfenic Acid Detection: Methods to Visualize and Identify Labeled Proteins / Simona G. Codreanu ; Daniel C. Liebler ; LeAnn C. Rogers ; Larry W. Daniel
Biotin-Based Affinity Capture to Identify Proteins Containing Cysteine Sulfenic Acids
Detection Methods to Identify Oxidized Proteins and Cysteines
Formation and Reactions of Sulfenic Acid in Human Serum Albumin / Beatriz Alvarez ; Sebastián Carballal ; Lucía Turell ; Rafael Radi
Preparation of Albumin Solutions
Preparation of Oxidized Albumin
Detection of Albumin Sulfenic Acid
Quantification of Albumin Sulfenic Acid Using Thionitrobenzoate (TNB)
Reactivity of Sulfenic Acid
Detection of Albumin Sulfinic Acid
Conclusions / 8:
Determination of GSH, GSSG, and GSNO Using HPLC with Electrochemical Detection / Li-Peng Yap ; Harsh Sancheti ; Maria D. Ybanez ; Jerome Garcia ; Enrique Cadenas ; Derick Han
Measurement of Mixed Disulfides Including Glutathionylated Proteins / Raffaella Priora ; Lucia Coppo ; Sonia Salzano ; Paolo Di Simplicio ; Pietro Ghezzi
Chemical Quantification of PSSX, PSSG, and PSSC
Visualization of PSSG by Western Blot
Detection and Quantification of Protein Disulfides in Biological Tissues: A Fluorescence-Based Proteomic Approach / Viviana I. Pérez ; Anson Pierce ; Eric M. de Waal ; Walter F. Ward ; Alex Bokov ; Asish Chaudhuri ; Arlan Richardson
Material and Methods
Results
Measurement and Identification of S-Glutathiolated Proteins / Bradford G. Hill ; Kota V. Ramana ; Jian Cai ; Aruni Bhatnagar ; Satish K. Srivastava9:
Chemical Methods for the Measurement of Glutathiolated Proteins
Detection of Glutathiolated Proteins by ESI/MS
Identification of S-Glutathiolated Proteins in Cells and Tissues
Acknowledgment
Proteome Screens for Cys Residues Oxidation: The Redoxome / Giovanni Chiappetta ; Sega Ndiaye ; Aeid lgbaria ; Chitranshu Kumar ; Joelle Vinh ; Michel B. Toledano10:
General Considerations
Overview of the Different Methods
Results and Discussion
Identification by MS/MS of Disulfides Produced by a Functional Redox Transition / Pierluigi Mauri ; Stefano Toppo ; Antonella De Palma ; Louise Benazzi ; Matilde Maiorino ; Fulvio Ursini11:
MS/MS Identification of Redox-Switches in Protein
Analytical Procedure
Mass Spectrometry Approaches for the Redox Characterization of Protein Cysteine Residues: The Case of the Transcription Factor Pax-8 / Andrea Scaloni ; Gianluca Tell12:
Materials and Methods
Conclusions and Future Perspectives
A Simple Method to Systematically Study Oxidatively Modified Proteins in Biological Samples and Its Applications / Byoung-Joon Song ; Soo-Kyung Suh ; Kwan-Hoon Moon13:
Direct and Indirect Detection Methods for the Analysis of S-Nitrosylated Peptides and Proteins / Federico Torta ; Lisa Elviri ; Angela Bachi14:
Indirect Detection of S-Nitrosylated Proteins: His-tag Switch
Direct Analysis of S-Nitrosylation by MS
A Rapid Approach for the Detection, Quantification, and Discovery of Novel Sulfenic Acid or S-Nitrosothiol Modified Proteins Using a Biotin-Switch Method / Joseph R. Burgoyne ; Philip Eaton15:
Overview of Analytical Strategy
Protein Adducts of Aldehydic Lipid Peroxidation Products: Identification and Characterization of Protein Adducts Using an Aldehyde/Keto-Reactive Probe in Combination with Mass Spectrometry / Claudia S. Maier ; Juan Chavez ; Jing Wang ; Jianyong Wu16:
Modification of Proteins by Aldehydic Lipid Peroxidation Products
Redox Proteomics of Protein Targets of Reactive Lipid Peroxidation Products
Mass Spectrometry-Based Approaches for the Identification and Characterization of Protein Adducts of Aldehydic Lipid Peroxidation Products
Experimental Strategy of Using an Aldehyde/Keto-Reactive Probe for the Targeted Analysis of Protein Adducts of Aldehydic Lipid Peroxidation Products
Applications of the ARP-Labeling Strategy
Interpretation of MS/MS Spectra of Protein Adducts and the Use of Diagnostic Marker Ions
Conclusion
Author Index
Subject Index
Contributors
Preface
Volumes in Series
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