Foreword |
Preface |
Nick Cozzarelli: A personal remembrance / Stephen D. Levene ; Lynn Zechiedrich |
Mathematical methods in DNA topology: Applications to chromosome organization and site-specific recombination / Javier Arsuaga ; Yuanan Diao ; Mariel Vazquez |
Conformational statistics of DNA and diffusion equations on the Euclidean group / Gregory S. Chirikjian |
Perspectives on DNA looping / Laura Finzi |
Differences between positively and negatively supercoiled DNA that topoisomerases may distinguish / Jonathan M. Fogg ; Daniel J. Catanese, Jr. ; Graham L. Randall ; Michelle C. Swick |
Calibration of tethered particle motion experiments / Lin Han ; Bertrand H. Lui ; Seth Blumberg ; John F. Beausang ; Philip C. Nelson ; Rob Phillips |
Difference topology: Analysis of high-order DNA-protein assemblies / Makkuni Jayaram ; Rasika Harshey |
Useful intrusions of DNA topology into experiments on protein-DNA geometry / Jason D. Kahn ; James R. Jenssen ; Vasavi Vittal |
Topological analysis of DNA-protein complexes / Soojeong Kim ; Isabel K. Darcy |
Closing the loop on protein-DNA interactions: Interplay between shape and flexibility in nucleoprotein assemblies having implications for biological regulation / Yongli Zhang |
Four-way helical junctions in DNA molecules / David M.J. Lilley |
Micromechanics of single supercoiled DNA molecules / John F. Marko |
Flexibility of nucleosomes on topologically constrained DNA / Andrei Sivolob ; Christophe Lavelle ; Ariel Prunell |
The mathematics of DNA structure, mechanics, and dynamics / David Swigon |
Paradox regained: a topological coupling of nucleosomal DNA wrapping and chromatin fibre coiling / Andrew Travers |
Statistical-mechanical analysis of enzymatic topological transformations in DNA molecules / Alexander Vologodskii |
List of workshop participants |
Foreword |
Preface |
Nick Cozzarelli: A personal remembrance / Stephen D. Levene ; Lynn Zechiedrich |
Mathematical methods in DNA topology: Applications to chromosome organization and site-specific recombination / Javier Arsuaga ; Yuanan Diao ; Mariel Vazquez |
Conformational statistics of DNA and diffusion equations on the Euclidean group / Gregory S. Chirikjian |
Perspectives on DNA looping / Laura Finzi |