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電子ブック

EB
Nejat DÃ〓zgÃ〓neÅ
出版情報: Elsevier ScienceDirect Books , Burlington : Elsevier, 2005
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目次情報:
Liposomal anti-cancer agents
Liposomal antibacterial, antifungal and antiviral agents
Miscellaneous liposomal therapies
Liposomal anti-cancer agents
Liposomal antibacterial, antifungal and antiviral agents
Miscellaneous liposomal therapies
2.

電子ブック

EB
David R. Engelke, David Ross Engelke, John J. Rossi
出版情報: Elsevier ScienceDirect Books , Burlington : Elsevier, 2005
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Transgene-induced RNA Interference as a Tool for Plant
Functional Genomics
Constructs and Methods for hairpin
RNA-mediated Gene
Silencing in Plants RNA interference in Caenorhabditis elegans
High-throughput RNAi screens in Drosophila tissue culture cells
Mechanistic insights aid computational siRNA design
Novel methods for expressing RNAi in human cells
Delivery of Small Interfering RNA to Mammalian Cells in Culture
Using Cationic Lipid/Polymer-Based Transfection Reagents
The subcellular distribution of siRNA: directed delivery through RNA polymerase III expression cassettes nd localization using in situ hybridization
Viral delivery of recombinant shRNAs
Downregulation of cellular genes by PCR cassettes expressing short interfering RNAs
Using short hairpin RNA expression vectors to study mammalian neural development
Analysis of T-cell development using siRNA to knockdown protein expression
Viral delivery of recombinant siRNA expression: lentivirus Paradigms for Conditional Expression of RNAi Molecules for use
Against Viral Targets
High throughput RNAi strategies for target discovery and validation using synthetic siRNAs: functional genomics investigations of biological pathways
RNA interference in vivo: towards synthetic siRNA based therapeutics
Labeling and characterization of small RNAs associated with the RNAi effector complex, RITS RNAi spreading in C. elegans
Human Dicer: Purification, properties, and interaction with PAZ PIWI domain proteins
Delivery of siRNA and siRNA
Expression
Constructions to Adult Mammals
Using Hydrodynamic Intravascular Injection
Analysis of siRNA function in RNAi using Drosophila
Embryo extracts and Schneider cells
Using RNA polymerase II to transcribe artificial microRNAs
Adeno-associated virus vectors for short hairpin RNA expression
Simple, Robust Strategies for Generating ddRNAi Constructs
Transgene-induced RNA Interference as a Tool for Plant
Functional Genomics
Constructs and Methods for hairpin
3.

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Michael W. Young
出版情報: Elsevier ScienceDirect Books , Burlington : Elsevier, 2005
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Genetic Approaches to Circadian Clocks
Tracking Circadian Control of Gene Activity
Molecular Cycles: Clock Protein Rhythms
Anatomical Representation of Neural Clocks
Mosaic Circadian Systems
Peripheral Circadian Clocks
Cell and Tissue Culture System
Intercellular Signaling
Photo-Responsive Clocks
Sleeping Flies Circadian
Biology of Populations
Circadian Clocks Affecting Non-Circadian Biology
Genetic Approaches to Circadian Clocks
Tracking Circadian Control of Gene Activity
Molecular Cycles: Clock Protein Rhythms
4.

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Volker Dötsch, Thomas L. James, Uli Schmitz
出版情報: Elsevier ScienceDirect Books , Burlington : Elsevier, 2005
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Identification and optimization of protein domains for NMR studies In-cell
NMR spectroscopy
Molecular Fragment
Replacement Approach to Protein Structure
Determination by Chemical Shift and Dipolar Homology
Database Mining
Cross-correlated relaxation for structure and dynamics
Rapid NMR
Data Collection
An Integrated Platform for Automated Analysis of Protein NMR Structures
Rapid Assessment of Protein
Structural Stability and Fold Validation via NMR
Determination of Protein Backbone Structures from Residual Dipolar Couplings
Robotic Cloning and Protein Production
Platform of the Northeast Structural Genomics
Consortium Protein Structure
Estimation From Minimal Restraints
Using Rosetta
Protein Structure
Elucidation From Minimal Data: The CLOUDS and ABACUS
Approaches
Elucidation of the Protein Folding
Landscape by NMR Membrane Protein
Preparation for TROSY NMR
Screening Solution structure and dynamics of integral membrane proteins by NMR: a case study involving the enzyme PagP NMR
Experiments on Aligned Samplet of Membrane Proteins
NMR techniques used with very large biological macromolecules in solution
Structure determination of large biological RNAs
Hydrodynamic Models and Computational Methods for NMR relaxation Solution
NMR Spin Relaxation Methods for Characterizing Chemical Exchange in High Molecular Weight Systems
Isotropic Reorientational Eigenmode
Dynamics Complements
NMR Relaxation Measurements for RNA
NMR techniques for identifying the interface of a larger protein-protein complex: cross and transferred cross-saturation experiments
Enzyme Dynamics
During Catalysis Measured by NMR
Spectroscopy Structure determination of protein/RNA complexes by NMR
Utilization of NMR-derived fragment leads in drug design
Discovery of Ligands by a Combination of Computational and NMR-based Screening: RNA as an Example Target
Identification and optimization of protein domains for NMR studies In-cell
NMR spectroscopy
Molecular Fragment
5.

電子ブック

EB
Eric H. Roalson, Elizabeth A. Zimmer
出版情報: Elsevier ScienceDirect Books , Burlington : Elsevier, 2005
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Isolation of DNA from plants with large amounts of secondary metabolites
Nucleic Acid Isolation from Environmental Aqueous Samples
Nucleic acid isolation from ecological samplesvertebrate gut flora
Nucleic acid isolation from ecological samples fungal associations, lichens
Nucleic acid isolation from ecological samplesfungal associations, mycorrhizae
Nucleic acid isolation from ecological samplesanimal scat and other associated materials
Isolation and analysis of DNA from archaeological, clinical and natural history specimens
Isolation and characterization of proteins from archaeological and ancient specimens
Animal Phylogenomics: Multiple Interspecific Genome Comparisons
ISSR techniques for evolutionary biology
Use of Amplified Fragment Length Polymorphism (AFLP) markers in surveys of vertebrate diversity
Use of AFLP markers in surveys of arthropod diversity
Use of AFLP markers in surveys of plant diversity
Isolating microsatellite DNA loci
Use of microsatellites for parentage and kinship analyses in animals
Use of capillary array electrophoresis single strand conformational polymorphism analysis to estimate genetic diversity of candidate genes in germplasm collections
Ribosomal RNA probes and microarrays: Their potential use in assessing microbial biodiversity
The role of geographic analyses in locating, understanding and using plant genetic diversity
In Situ Hybridization of Phytoplankton
Using Fluorescently-Labelled rRNA Probes
Sequencing and comparing whole mitochondrial genomes of animals
Methods for obtaining and analyzing whole chloroplast genome sequences
Construction of Bacterial Artificial Chromosome libraries for use in phylogenetic studies
Comparative EST analyses in plant systems
Isolation of genes from plant Y chromosomes
Preparation of samples for comparative studies of plant chromosomes using in situ hybridization methods
Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation
Experimental methods for assaying natural transformation and inferring horizontal gene transfer
Use of confocal microscopy in comparative studies of vertebrate morphology
PrimerSelect: A transcriptome-wide oligonucleotide primer pair design program for kinetic RT-PCR-based transcript profiling
Detecting differential expression of parental or progenitor alleles in genetic hybrids and allopolyploids genome-wide analysis of gene expression changes in polyploids
Designing experiments using spotted microarrays to detect gene regulation differences within and among species
Methods for studying the evolution of plant reproductive structures: Comparative gene expression techniques
Developing antibodies to synthetic peptides based on comparative DNA sequencing of multigene families
Application of ancestral protein reconstruction in understanding protein function: GFP-like proteins
Advances in phylogeny reconstruction from gene order and content data
Analytical methods for detecting paralogy in molecular datasets
Analytical methods for studying the evolution of paralogs using duplicate gene data sets
Supertree construction in the genomic age
Maximum-likelihood methods for phylogeny estimation
Context Dependence and Co-Evolution among Amino Acid Resideue in Proteins
Isolation of DNA from plants with large amounts of secondary metabolites
Nucleic Acid Isolation from Environmental Aqueous Samples
Nucleic acid isolation from ecological samplesvertebrate gut flora
6.

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EB
Enrique Cadenas, Lester Packer
出版情報: Elsevier ScienceDirect Books , 2005
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Contributors to Volume 396
Preface
Volumes in Series
Biochemical, Molecular, and Real-Time Detection of Nitric Oxide / Section I:
The Preparation of Anaerobic Nitric Oxide Solutions for the Study of Heme Model Systems in Aqueous and Nonaqueous Media. Some Consequences of NO[subscript x] Impurities / Mark D. Lim ; Ivan M. Lorkovic ; Peter C. Ford1:
The NOtizer-A Device for the Convenient Preparation of Diazen-1-ium-1,2-diolates / Joerg Konter ; Gamal El-Din Ali Ahmed ; Hassan Abuo-Rahma ; Ali El-Emam ; Jochen Lehmann2:
Quantum Mechanical Determinations of Reaction Mechanisms, Acid Base, and Redox Properties of Nitrogen Oxides and Their Donors / Andrew S. Dutton ; Jon M. Fukuto ; K. N. Houk3:
Electrochemical and Spectrophotometric Methods for Evaluation of NO Dissociation Rate Constants from Nitrosyl Metal Complexes Activated through Reduction / Mauro Bertotti ; Vania Mori ; Patricia Zanichelli ; Jose Carlos Toledo ; Douglas Wagner Franco4:
Sensitive and Isotope-Selective ([superscript 14]NO/[superscript 15]NO) Online Detection of Nitric Oxide by Faraday-Laser Magnetic Resonance Spectroscopy / Ralph Gabler5:
Qualitative and Quantitative Determination of Nitrite and Nitrate with Ion Chromatography / Reinhard Kissner ; Willem H. Koppenol6:
Electrochemical Detection of Nitric Oxide in Biological Fluids / Barry W. Allen ; Jie Liu ; Claude A. Piantadosi7:
Simultaneous Detection of NO and ROS by ESR in Biological Systems / Yuanlin Cao ; Pink Guo ; Yangcang Xu ; Baolu Zhao8:
The ESR Method to Determine Nitric Oxide in Plants / Yi Tao9:
Nitration and S-Nitrosylation / Section II:
S-Nitrosothiol Formation / Jeannean Carver ; Allan Doctor ; Khalequz Zaman ; Benjamin Gaston10:
Detection and Characterization of Protein Nitrosothiols / Samie R. Jaffrey11:
Detection of Nitrosothiols and Other Nitroso Species In Vitro and in Cells / David Jourd'heuil ; Frances L. Jourd'Heuil ; Anthony M. Lowery ; John Hughes ; Matthew B. Grisham12:
Detection and Identification of S-Nitrosylated Proteins in Endothelial Cells / Antonio Martinez-Ruiz ; Santiago Lamas13:
S-Nitrosylation in Parkinson's Disease and Related Neurodegenerative Disorders / Kenny K. K. Chung ; Valina L. Dawson ; Ted M. Dawson14:
Dynamic Assessment of Nitration Reactions In Vivo / Ali R. Mani ; Kevin P. Moore15:
Protein Nitration in Biological Aging: Proteomic and Tandem Mass Spectrometric Characterization of Nitrated Sites / Jaroslaw Kanski ; Christian Schoneich16:
HPLC-Electrochemical Detection of Tocopherol Products as Indicators of Reactive Nitrogen Intermediates / Kenneth Hensley ; Kelly S. Williamson17:
Hydrophobic Tyrosyl Probes for Monitoring Nitration Reactions in Membranes / Hao Zhang ; Joy Joseph ; B. Kalyanaraman18:
Peroxynitrite / Section III:
Synthesis of Peroxynitrite from Nitrite and Hydrogen Peroxide / Kristine M. Robinson ; Joseph S. Beckman19:
Peroxynitrite-Dependent Upregulation of Src Kinases in Red Blood Cells: Strategies to Study the Activation Mechanisms / Mauro Serafini ; Cinzia Mallozzi ; Anna Maria Michela Di Stasi ; Maurizio Minetti20:
Hemoglobin and Red Blood Cells as Tools for Studying Peroxynitrite Biochemistry / Natalia Romero ; Rafael Radi21:
Quantification of 3-Nitrotyrosine Levels Using a Benchtop Ion Trap Mass Spectrometry Method / Stephen J. Nicholls ; Zhongzhou Shen ; Xiaoming Fu ; Bruce S. Levison ; Stanley L. Hazen22:
Mapping Sites of Tyrosine Nitration by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry / Illarion V. Turko ; Ferid Murad23:
Peroxynitrite in the Pathogenesis of Parkinson's Disease and the Neuroprotective Role of Metallothioneins / Manuchair Ebadi ; Sushil K. Sharma ; Pedram Ghafourifar ; Holly Brown-Borg ; H. El ReFaey24:
Signaling and Gene Expression / Section IV:
Yeast Model System for Examining Nitrogen Oxide Biochemistry/Signaling / Masaru Shinyashiki ; Brenda E. Lopez ; Chester E. Rodriguez25:
Fluorescence Resonance Energy Transfer-Based Assays for the Real-Time Detection of Nitric Oxide Signaling / Claudette M. St. Croix ; Molly S. Stitt ; Simon C. Watkins ; Bruce R. Pitt26:
Nitric Oxide Is a Signaling Molecule that Regulates Gene Expression / Lorne J. Hofseth ; Ana I. Robles ; Michael G. Espey ; Curtis C. Harris27:
NO Signaling in ARE-Mediated Gene Expression / Eun Young Park ; Sang Geon Kim28:
Tyrosine Phosphorylation in Nitric Oxide-Mediated Signaling Events / Hugo P. Monteiro ; Carlos J. Rocha Oliveira ; Marli F. Curcio ; Miriam S. Moraes ; Roberto J. Arai29:
Identification and Evaluation of NO-Regulated Genes by Differential Analysis of Primary cDNA Library Expression (DAzLE) / Suk J. Hong30:
Role of NO in Enhancing the Expression of HO-1 in LPS-Stimulated Macrophages / Klaokwan Srisook ; Chaekyun Kim ; Young-Nam Cha31:
G-Protein Signaling in iNOS Gene Expression / Chang Ho Lee32:
Determination of Nitric Oxide-Donor Effects on Tissue Gene Expression In Vivo Using Low Density Gene Arrays / Doanh C. Tran ; Daniel A. Brazeau ; Ho-Leung Fung33:
Cell Biology and Physiology / Section V:
Cell H[subscript 2]O[subscript 2] Steady-State Concentration and Mitochondrial Nitric Oxide / Maria Cecilia Carreras ; Maria Clara Franco ; Daniela P. Converso ; Paola Finocchieto ; Soledad Galli ; Juan Jose Poderoso34:
Cytotoxic and Cytoprotective Actions of O[superscript - subscript 2] and NO (ONOO[superscript -]) are Determined Both by Cellular GSH Level and HO Activity in Macrophages / 35:
Determination of Mitochondrial Nitric Oxide Synthase Activity / Melinda L. Asbury ; Sandeep S. Joshi ; Eric D. Kincaid36:
Functional Activity of Mitochondrial Nitric Oxide Synthase / Laura B. Valdez ; Tamara Zaobornyj ; Alberto Boveris37:
Tetrahydrobiopterin as Combined Electron/Proton Donor in Nitric Oxide Biosynthesis: Cryogenic UV-Vis and EPR Detection of Reaction Intermediates / Antonius C. F. Gorren ; Morten Sorlie ; K. Kristoffer Andersson ; Stephane Marchal ; Reinhard Lange ; Bernd Mayer38:
Antisense-Mediated Knockdown of iNOS Expression in the Presence of Cytokines / Karsten Hemmrich ; Cristoph V. Suschek ; Victoria Kolb-Bachofen39:
Soluble Guanylyl Cyclase: The Nitric Oxide Receptor / Emil Martin ; Vladimir Berka ; Ah-Lim Tsai40:
Purification and Characterization of NO-Sensitive Guanylyl Cyclase / Michael Russwurm ; Doris Koesling41:
The Measurement of Nitric Oxide Production by Cultured Endothelial Cells / C. Michael Hart ; Dean J. Kleinhenz ; Sergey I. Dikalov ; Beth M. Boulden ; Samuel C. Dudley, Jr42:
Use of Microdialysis to Study Interstitial Nitric Oxide and Other Reactive Oxygen and Nitrogen Species in Skeletal Muscle / Malcolm J. Jackson43:
Nitric Oxide, Proteasomal Function, and Iron Homeostasis-Implications in Aging and Neurodegenerative Diseases / Srigiridhar Kotamraju ; Shasi Kalivendi ; Tiesong Shang44:
Nitric Oxide Production in Primary Liver Cells Isolated from Amino Acid Diet-Fed Rats / Yashige Kotake ; Hideki Kishida ; Dai Nakae ; Robert A. Floyd45:
Update on Nitric Oxide-Dependent Vasodilation in Human Subjects / Craig J. McMackin ; Joseph A. Vita46:
Assessing NO-Dependent Vasodilatation Using Vessel Bioassays at Defined Oxygen Tensions / T. Scott Isbell ; Jeffrey R. Koenitzer ; Jack H. Crawford ; C. R. White ; David W. Kraus ; Rakesh P. Patel47:
Nonenzymatic Nitric Oxide Formation during UVA Irradiation of Human Skin: Experimental Setups and Ways to Measure / Christoph V. Suschek ; Adnana Paunel48:
Nitric Oxide and Cell Signaling: In Vivo Evaluation of NO-dependent Apoptosis by MRI and Not NMR Techniques / Sonsoles Hortelano ; Miriam Zeini ; Paqui G. Traves ; Lisardo Bosca49:
Microelectrode for In Vivo Real-Time Detection of NO / Tayfun Dalbasti ; Emrah Kilinc50:
Real-Time Detection of Nitric Oxide Isotopes in Lung Function Tests / H. Heller ; R. Gabler ; K.-D. Schuster51:
ESR Techniques for the Detection of Nitric Oxide In Vivo and in Tissues / Sergey Dikalov ; Bruno Fink52:
Author Index
Subject Index
Contributors to Volume 396
Preface
Volumes in Series
7.

電子ブック

EB
Jared R. Leadbetter
出版情報: Elsevier ScienceDirect Books , 2005
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Contributors to Volume 397
Preface
Volumes in Series
Cultivation / Section I:
Anoxic Media Design, Preparation, and Considerations / Caroline M. Plugge1:
Enrichment and Isolation of Anaerobic Hydrocarbon-Degrading Bacteria / Irene A. Davidova ; Joseph M. Suflita2:
Anammox Organisms: Enrichment, Cultivation, and Environmental Analysis / Mike Jetten ; Markus Schmid ; Katinka van de Pas-Schoonen ; Jaap Sinninghe Damste ; Marc Strous3:
Enrichment and Isolation of Ferric-Iron- and Humic-Acid-Reducing Bacteria / Kristina L. Straub ; Andreas Kappler ; Bernhard Schink4:
Enrichment, Cultivation, and Detection of Reductively Dechlorinating Bacteria / Frank E. Loffler ; Robert A. Sanford ; Kirsti M. Ritalahti5:
Enrichment and Isolation of Iron-oxidizing Bacteria at Neutral pH / David Emerson ; Melissa Merrill Floyd6:
High-Throughput Cultivation of Microorganisms Using Microcapsules / Karsten Zengler ; Marion Walcher ; Greg Clark ; Imke Haller ; Gerardo Toledo ; Trevin Holland ; Eric J. Mathur ; Gary Woodnutt ; Jay M. Short ; Martin Keller7:
Physiological Ecology / Section II:
Chemotaxis and Behavioral Physiology of Not-yet-cultivated Microbes / Jorg Overmann8:
Analysis of Microbial Communities with Electrochemical Microsensors and Microscale Biosensors / Niels Peter Revsbech9:
Optical Microsensors for Analysis of Microbial Communities / Michael Kuhl10:
In Situ Measurements of Metabolite Fluxes: Microinjection of Radiotracers into Insect Guts and Other Small Compartments / Andreas Brune ; Michael Pester11:
Assaying for the 3-Hydroxypropionate Cycle of Carbon Fixation / Michael Hugler ; Georg Fuchs12:
Analysis of Trace Hydrogen Metabolism / 13:
Advances in Microscopy: Microautoradiography of Single Cells / Jeppe Lund Nielsen ; Per Halkjaer Nielsen14:
Atomic Force Microscopy of Bacterial Communities / Megan E. Nunez ; Mark O. Martin ; Phyllis H. Chan ; Lin K. Duong ; Anil R. Sindhurakar ; Eileen M. Spain15:
Nucleic Acid Techniques / Section III:
Nucleic Acid Recovery from Complex Environmental Samples / Kevin J. Purdy16:
The Application of Rarefaction Techniques to Molecular Inventories of Microbial Diversity / Jennifer B. Hughes ; Jessica J. Hellmann17:
Culture-Independent Microbial Community Analysis with Terminal Restriction Fragment Length Polymorphism / Terence L. Marsh18:
Quantitative Community Analysis: Capillary Electrophoresis Techniques / Jeremy D. Semrau ; Jong-In Han19:
In Situ Functional Gene Analysis: Recognition of Individual Genes by Fluorescence In Situ Hybridization / Katrin Zwirglmaier ; Katrin Fichtl ; Wolfgang Ludwig20:
Simultaneous Fluorescence In Situ Hybridization of mRNA and rRNA for the Detection of Gene Expression in Environmental Microbes / Annelie Pernthaler ; Jakob Pernthaler21:
Community-Level Analysis of Phototrophy: psbA Gene Diversity / Gill Zeidner ; Oded Beja22:
Quantitative Analysis of nifH Genes and Transcripts from Aquatic Environments / Steven M. Short ; Jonathan P. Zehr23:
Community Level Analysis: Genetic and Biogeochemical Approaches to Investigate Community Composition and Function in Aerobic Ammonia Oxidation / Bess B. Ward ; Gregory D. O'Mullan24:
Community-Level Analysis: Key Genes of Aerobic Methane Oxidation / Marc G. Dumont ; J. Colin Murrell25:
Methyl-Coenzyme M Reductase Genes: Unique Functional Markers for Methanogenic and Anaerobic Methane-Oxidizing Archaea / Michael W. Friedrich26:
Community-Level Analysis: Genes Encoding Methanopterin-Dependent Activities / Marina G. Kalyuzhnaya ; Ludmila Chistoserdova27:
Community-Level Analysis: Key Genes of CO[subscript 2]-Reductive Acetogenesis / Charles R. Lovell ; Adam B. Leaphart28:
Functional Marker Genes for Identification of Sulphate-Reducing Prokaryotes / Michael Wagner ; Alexander Loy ; Michael Klein ; Natuschka Lee ; Niels B. Ramsing ; David A. Stahl29:
Author Index
Subject Index
Contributors to Volume 397
Preface
Volumes in Series
8.

電子ブック

EB
Raymond Joseph Deshaies
出版情報: Elsevier ScienceDirect Books , 2005
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Contributors to Volume 398
Acknowledgments
Volumes in Series
E1 Enzyme / Section I:
High-Level Expression and Purification of Recombinant E1 Enzyme / Sylvie Beaudenon ; Jon M. Huibregtse1:
Expression, Purification and Characterization of the E1 for Human NEDD8, the Heterodimeric APPBP1-UBA3 Complex / Danny T. Huang ; Brenda A. Schulman2:
A Fluorescence Resonance Energy Transfer-Based Assay to Study SUMO Modification in Solution / Guillaume Bossis ; Katarzyna Chmielarska ; Ulrike Gartner ; Andrea Pichler ; Evelyn Stieger ; Frauke Melchior3:
Properties of the ISG15 E1 Enzyme UbE1L / Robert M. Krug ; Chen Zhao4:
E2 Enzyme / Section II:
Purification and Properties of the Ubiquitin-Conjugating Enzymes Cdc34 and Ubc13.Mms2 / Christopher Ptak ; Xaralabos Varelas ; Trevor Moraes ; Sean McKenna ; Michael J. Ellison5:
Expression, Purification, and Properties of the Ubc4/5 Family E2 Enzymes / Kevin L. Lorick ; Jane P. Jensen ; Allan M. Weissman6:
In Vitro Systems for Nedd8 Conjugation by Ubc12 / Tomoki Chiba7:
Purification and Activity Assays for Ubc9, the Ubiquitin-Conjugating Enzyme for the Small Ubiquitin-Like Modifier SUMO / Ali A. Yunus ; Christopher D. Lima8:
High-Througput Assay to Monitor Formation of the E2-Ubiquitin Thioester Intermediate / Patrick Hauser ; Francesco Hofmann9:
E3 Enzyme / Section III:
Expression and Evaluation of RING Finger Proteins / Yili Yang10:
Expression and Assay of HECT Domain Ligases / Anahita Dastur11:
High-Level Expression and Purification of Recombinant SCF Ubiquitin Ligases / Ti Li ; Nikola P. Pavletich ; Ning Zheng12:
In Vitro Reconstitution of SCF Substrate Ubiquitination with Purified Proteins / Matthew D. Petroski ; Raymond J. Deshaies13:
Expression and Assay of Glycoprotein-Specific Ubiquitin Ligases / Yukiko Yoshida14:
Affinity Purification of Mitotic Anaphase-Promoting Complex/Cyclosome on p13[superscript Suc1] / Avram Hershko15:
Large-Scale Purification of the Vertebrate Anaphase-Promoting Complex/Cyclosome / Franz Herzog ; Jan-Michael Peters16:
Purification and Assay of the Budding Yeast Anaphase-Promoting Complex / Lori A. Passmore ; David Barford ; J. Wade Harper17:
Enzymology of the Anaphase-Promoting Complex / Christopher W. Carroll ; David O. Morgan18:
Identification of Cell Cycle-Dependent Phosphorylation Sites on the Anaphase-Promoting Complex/Cyclosome by Mass Spectrometry / Karl Mechtler19:
Purification and Assay of Mad2: A Two-State Inhibitor of Anaphase-Promoting Complex/Cyclosome / Xuelian Luo ; Hongtao Yu20:
Identification, Expression, and Assay of an Oxidation-Specific Ubiquitin Ligase, HOIL-1 / Kazuhiro Iwai ; Haruto Ishikawa ; Takayoshi Kirisako21:
Purification and Assay of the Chaperone-Dependent Ubiquitin Ligase of the Carboxyl Terminus of Hsc70-Interacting Protein / Shigeo Murata ; Michiko Minami ; Yasufumi Minami22:
Methods for the Functional Genomic Analysis of Ubiquitin Ligases / Wei Li ; Sumit K. Chanda ; Ivana Micik ; Claudio A. P. Joazeiro23:
Proteasome / Section IV:
Purification of PA700, the 19S Regulatory Complex of the 26S Proteasome / George N. DeMartino24:
Purification and Analysis of Recombinant 11S Activators of the 20S Proteasome: Trypanosoma brucei PA26 and Human PA28[alpha], PA28[beta], and PA28[gamma] / Eugene I. Masters ; Gregory Pratt ; Andreas Forster ; Christopher P. Hill25:
Purification and Assay of Proteasome Activator PA200 / Vicenca Ustrell ; Carlos Gorbea ; Martin Rechsteiner26:
Purification, Crystallization and X-Ray Analysis of Yeast 20S Proteasome / Michael Groll ; Robert Huber27:
Preparation of Hybrid (19S-20S-PA28) Proteasome Complexes and Analysis of Peptides Generated during Protein Degradation / Paolo Cascio ; Alfred L. Goldberg28:
Characterization of the Proteasome Using Native Gel Electrophoresis / Suzanne Elsasser ; Marion Schmidt ; Daniel Finley29:
Monitoring Activity and Inhibition of 26S Proteasomes with Fluorogenic Peptide Substrates / Alexei F. Kisselev30:
The Synthesis and Proteasomal Degradation of a Model Substrate Ub[subscript 5]DHFR / Y. Amy Lam ; Jen-Wei Huang ; Oluwafemi Showole31:
Assaying Degradation and Deubiquitination of a Ubiquitinated Substrate by Purified 26S Proteasomes / Rati Verma ; R. J. Deshaies32:
Probing the Ubiquitin/Proteasome System with Ornithine Decarboxylase, a Ubiquitin-Independent Substrate / Martin A. Hoyt ; Mingsheng Zhang ; Philip Coffino33:
Atomic Force Microscopy of the Proteasome / Pawel A. Osmulski ; Maria Gaczynska34:
Characterization of Noncompetitive Regulators of Proteasome Activity / 35:
Development and Use of Antiproteasome Monoclonal Antibodies / Klavs B. Hendil36:
Isopeptidases / Section V:
Preparation and Characterization of Yeast and Human Desumoylating Enzymes / Shyr-Jiann Li ; William Hankey ; Mark Hochstrasser37:
Purification of the COP9 Signalosome from Porcine Spleen, Human Cell Lines, and Arabidopsis thaliana Plants / Suchithra Menon ; Vicente Rubio ; Xiping Wang ; Xing-Wang Deng ; Ning Wei38:
Purification Method of the COP9 Signalosome from Human Erythrocytes / Bettina K. J. Hetfeld ; Dawadschargal ; Bech-Otschir ; Wolfgang Dubiel39:
UBP43, an ISG15-Specific Deconjugating Enzyme: Expression, Purification, and Enzymatic Assays / Keun Il Kim ; Dong-Er Zhang40:
Strategies for Assaying Deubiquitinating Enzymes / Sung Hwan Kang ; Jung Jun Park ; Sung Soo Chung ; Ok Sun Bang ; Chin Ha Chung41:
In Vitro Cleavage of Nedd8 from Cullin 1 by COP9 Signalosome and Deneddylase 1 / Kosj Yamoah ; Kenneth Wu ; Zhen-Qiang Pan42:
Ubiquitin-Ovomucoid Fusion Proteins as Model Substrates for Monitoring Degradation and Deubiquitination by Proteasomes / Tingting Yao ; Robert E. Cohen43:
Using Deubiquitinating Enzymes as Research Tools / Rohan T. Baker ; Ann-Maree Catanzariti ; Yamuna Karunasekara ; Tatiana A. Soboleva ; Robert Sharwood ; Spencer Whitney ; Philip G. Board44:
Functional Annotation of deubiquitinating Enzymes Using RNA Interference / Annette M. G. Dirac ; Sebastian M. B. Nijman ; Thijn R. Brummelkamp ; Rene Bernards45:
Author Index
Subject Index
Contributors to Volume 398
Acknowledgments
Volumes in Series
9.

電子ブック

EB
Raymond Joseph Deshaies
出版情報: Elsevier ScienceDirect Books , 2005
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Contributors to Volume 399
Acknowledgments
Volumes in Series
Ubiquitin and Ubiquitin Derivatives / Section I:
Chemical and Genetic Strategies for Manipulating Polyubiquitin Chain Structure / Sara Volk ; Min Wang ; Cecile M. Pickart1:
Controlled Synthesis of Polyubiquitin Chains / Shahri Raasi2:
Derivitization of the C-Terminus of Ubiquitin and Ubiquitin-Like Proteins Using Intein Chemistry: Methods and Uses / Keith D. Wilkinson ; Tudeviin Gan-Erdene ; Nagamalleswari Kolli3:
Preparation, Characterization, and Use of Tagged Ubiquitins / Judy Callis ; Richard Ling4:
Knocking out Ubiquitin Proteasome System Function In Vivo and In Vitro with Genetically Encodable Tandem Ubiquitin / Y. Saeki ; E. Isono ; M. Shimada ; H. Kawahara ; H. Yokosawa ; A. Toh-e5:
Production of Antipolyubiquitin Monoclonal Antibodies and Their Use for Characterization and Isolation of Polyubiquitinated Proteins / Masahiro Fujimuro ; Hideyoshi Yokosawa6:
Application of Ubiquitin Immunohistochemistry to Diagnosis of Disease / James Lowe ; Neil Hand ; John Mayer7:
Mechanism-Based Proteomics Tools Based on Ubiquitin and Ubiquitin-Like Proteins: Crystallography, Activity Profiling, and Protease Identification / Paul J. Galardy ; Hidde L. Ploegh ; Huib Ovaa8:
Ubiquitin Binding Domains / Section II:
Identification and Characterization of Modular Domains That Bind Ubiquitin / Michael French ; Kurt Swanson ; Susan C. Shih ; Ishwar Radhakrishnan ; Linda Hicke9:
Analysis of Ubiquitin Chain-Binding Proteins by Two-Hybrid Methods / Jennifer Apodaca ; Jungmi Ahn ; Ikjin Kim ; Hai Rao10:
Quantifying Protein Protein Interactions in the Ubiquitin Pathway by Surface Plasmon Resonance / Rasmus Hartmann-Peterson ; Colin Gordon11:
Using NMR Spectroscopy to Monitor Ubiquitin Chain Conformation and Interactions with Ubiquitin-Binding Domains / Ranjani Varadan ; Michael Assfalg ; David Fushman12:
Analysis of Ubquitin-Dependent Protein Sorting Within the Endocytic Pathway in Saccharomyces cerevisiae / David J. Katzmann ; Beverly Wendland13:
Methods to Study the Proteasome / Section III:
Preparation of Ubiquitinated Substrates by the PY Motif-Insertion Method for Monitoring 26S Proteasome Activity / 14:
Large- and Small-Scale Purification of Mammalian 26S Proteasomes / Yuko Hirano ; Shigeo Murata ; Keiji Tanaka15:
Identification and Characterization of Substrates and Ubiquitin ligases / Section IV:
Is This Protein Ubiquitinated? / Peter Kaiser ; Christian Tagwerker16:
Experimental Tests to Definitively Determine Ubiquitylation of a Substrate / Joanna Bloom ; Michele Pagano17:
Identification of Ubiquitination Sites and Determination of Ubiquitin-Chain Architectures by Mass Spectrometry / James Wohlschlegel18:
Mapping of Ubiquitination Sites on Target Proteins / Shigetsugu Hatakeyama ; Masaki Matsumoto ; Keiichi I. Nakayama19:
Identification of Substrates for F-Box Proteins / Jianping Jin ; Xiaolu L. Ang ; Takahiro Shirogane ; J. Wade Harper20:
Fusion-Based Strategies to Identify Genes Involved in Degradations of a Specific Substrate / Randolph Y. Hampton21:
Bi-Substrate Kinetic Analysis of an E3-Ligase-Dependent Ubiquitylation Reaction / David C. Swinney ; Michael J. Rose ; Amy Y. Mak ; Ina Lee ; Liliana Scarafia ; Yi-Zheng Xu22:
Screening of Tissue Microarrays for Ubiquitin Proteasome System Components in Tumors / Norman L. Lehman ; Matt van de Rijn ; Peter K. Jackson23:
Structure-Based Approaches to Create New E2-E3 Enzyme Pairs / G. Sebastian Winkler ; H. Th. Marc Timmers24:
Proteomic Analysis of Ubiquitin Conjugates in Yeast / Junmin Peng ; Dongmei Cheng25:
Genome and Proteome-wide Approaches to Identify Substrates and Enzymes / Section V:
Two-Step Affinity Purification of Multiubiquitylated Proteins from Saccharomyces cerevisiae / Thibault Mayor ; Raymond J. Deshaies26:
Identification of SUMO-Protein Conjugates / Meik Sacher ; Boris Pfander ; Stefan Jentsch27:
Identification of Ubiquitin Ligase Substrates by In Vitro Expression Cloning / Nagi G. Ayad ; Susannah Rankin ; Danny Ooi ; Michael Rape ; Marc W. Kirschner28:
In Vitro Screening for Substrates of the N-End Rule-Dependent Ubiquitylation / Ilia V. Davydov ; John H. Kenten ; Yassamin J. Safiran ; Stefanie Nelson ; Ryan Swenerton ; Pankaj Oberoi ; Hans A. Biebuyck29:
Genome-Wide Surveys for Phosphorylation-Dependent Substrates of SCF Ubiquitin Ligases / Xiaojing Tang ; Stephen Orlicky ; Qingquan Liu ; Andrew Willems ; Frank Sicheri ; Mike Tyers30:
Yeast Genomics in the Elucidation of Endoplasmic Reticulum (ER) Quality Control and Associated Protein Degradation (ERQD) / Antje Schafer ; Dieter H. Wolf31:
Mechanism-Based Proteomics Tools Based on Ubiquitin and Ubiquitin-Like Proteins: Synthesis of Active-Site Directed Probes / 32:
Real Time/Non-Invasive Technologies / Section VI:
Application and Analysis of the GFP[superscript u] Family of Ubiquitin-Proteasome System Reporters / Neil F. Bence ; Eric J. Bennett ; Ron R. Kopito33:
Monitoring of Ubiquitin-Dependent Proteolysis with Green Fluorescent Protein Substrates / Victoria Menendez-Benito ; Stijn Heessen ; Nico P. Dantuma34:
Monitoring Proteasome Activity In Cellulo and in Living Animals by Bioluminescent Imaging: Technical Considerations for Design and Use of Genetically Encoded Reporters / Shimon Gross ; David Piwnica-Worms35:
Bioluminescent Imaging of Ubiquitin Ligase Activity: Measuring Cdk2 Activity In Vivo Through Changes in p27 Turnover / Guo-Jun Zhang ; Willam G. Kaelin, Jr.36:
Monitoring the Distribution and Dynamics of Proteasomes in Living Cells / Tom A.M. Groothuis ; Eric A.J. Reits37:
Small Molecule Inhibitors / Section VII:
Identifying Small Molecules Inhibitors of the Ubiquitin-Proteasome Pathway in Xenopus Egg Extracts / Adrian Salic ; Randall W. King38:
Development and Characterization of Proteasome Inhibitors / Kyung Bo Kim ; Fabiana N. Fonseca ; Craig M. Crews39:
Screening for Selective Small Molecule Inhibitors of the Proteasome Using Activity-Based Probes / Matthew Bogyo40:
Development of E3-Substract (MDM2-p53)-Binding Inhibitors: Structural Aspects / David C. Fry ; Bradford Graves ; Lyubomir T. Vassilev41:
Druggability of SCF Ubiquitin Ligase-Protein Interfaces / Timothy Cardozo ; Ruben Abagyan42:
Overview on Approaches for Screening for Ubiquitin Ligase Inhibitors / Yi Sun43:
A Homogeneous FRET Assay System for Multiubiquitin Chain Assembly and Disassembly / Tarikere L. Gururaj ; Todd R. Pray ; Raymond Lowe ; Guoqiang Dong ; Jianing Huang ; Sarkiz Daniel-Issakani ; Donald G. Payan44:
Assays for High-Throughput Screening of E2 and E3 Ubiquitin Ligases / David H. Stewart45:
Quantitative Assays for Mdm2 Ubiquitin Ligase Activity and Other Ubiquitin-Utilizing Enzymes for Inhibitor Discovery / Kurt R. Auger ; Robert A. Copeland ; Zhihong Lai46:
High-Throughput Screening for Inhibitors of the Cks1-Skp2 Interaction / Kuo-Sen Huang47:
In Vitro SCF[superscript beta-Trcp1]-Mediated I[kappa]B[alpha] Ubiquitination Assay for High-Throughput Screen / Shuichan Xu ; Palka Patel ; Mahan Abbasian ; David Giegel ; Weilin Xie ; Frank Mercurio ; Sarah Cox48:
High-Throughput Screening for Inhibitors of the E3 Ubiquitin Ligase APC / Julie Sheung ; Christina Coquilla49:
Generally Applicable Technologies / Section VIII:
The Split-Ubiquitin Sensor: Measuring Interactions and Conformational Alterations of Proteins In Vivo / Christoph Reichel ; Nils Johnsson50:
Ubiquitin Fusion Technique and Related Methods / Alexander Varshavsky51:
Heat-Inducible Degron and the Making of Codintional Mutants / R. Jurgen Dohmen52:
Ectopic Targeting of Substrates to the Ubiquitin Pathway / Jianxuan Zhang ; Pengbo Zhou53:
Chimeric Molecules to Target Proteins for Ubiquitination and Degradation / Kathleen M. Sakamoto54:
Author Index
Subject Index
Contributors to Volume 399
Acknowledgments
Volumes in Series
10.

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Lester Packer, Helmut Sies
出版情報: Elsevier ScienceDirect Books , 2005
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Contributors to Volume 400
Preface
Volumes in Series
UDP-Glucuronosyltransferases: Gene Structures of UGT1 and UGT2 Families / Ida S. Owens ; Nikhil K. Basu ; Rajat Banerjee1:
Identification and Characterization of Functional Hepatocyte Nuclear Factor 1-Binding Sites in UDP-Glucuronosyltransferase Genes / Dione A. Gardner-Stephen ; Philip A. Gregory ; Peter I. Mackenzie2:
Substrate Specificity of Human Hepatic UDP-Glucuronosyltransferaes / Brian Burchell ; David J. Lockley ; Adam Staines ; Yoshihiro Uesawa ; Michael W. H. Coughtrie3:
UDP-Glucuronosyltransferase 1A6: Structural, Functional, and Regulatory Aspects / Karl Walter Bock ; Christoph Kohle4:
The Role of Ah Receptor in Induction of Human UDP-Glucuronosyltransferase 1A1 / Mei-Fei Yueh ; Jessica A. Bonzo ; Robert H. Tukey5:
Regulation of the Human UGT1A1 Gene by Nuclear Receptors Constitutive Active/Androstane Receptor, Pregnane X Receptor, and Glucocorticoid Receptor / Junko Sugatani ; Tatsuya Sueyoshi ; Masahiko Negishi ; Masao Miwa6:
Isoform-Selective Probe Substrates for In Vitro Studies of Human UDP-Glucuronosyltransferases / Michael H. Court7:
Structure of UDP-Glucuronosyltransferases in Membranes / Anna Radominska-Pandya ; Mohamed Ouzzine ; Sylvie Fournel-Gigleux ; Jacques Magdalou8:
Human SULT1A Genes: Cloing and Activity Assays of the SULT1A Promoters / Nadine Hempel ; Michael E. McManus9:
Vitamin D Receptor Regulation of the Steroid/Bile Acid Sulfotransferase SULT2A1 / Bandana Chatterjee ; Ibtissam Echchgadda ; Chung Seog Song10:
Screening and Characterizing Human NAT2 Variants / Mihaela R. Savulescu ; Adeel Mushtaq ; P. David Josephy11:
Inactivation of Human Arylamine N-Acetyltransferase 1 by Hydrogen Peroxide and Peroxynitrite / Jean-Marie Dupret ; Julien Dairou ; Noureddine Atmane ; Fernando Rodrigues-Lima12:
Sulfotransferases and Acetyltransferases in Mutagenicity Testing: Technical Aspects / Hansruedi Glatt ; Walter Meinl13:
A Comparative Molecular Field Analysis-Based Approach to Prediction of Sulfotransferase Catalytic Specificity / Vyas Sharma ; Michael W. Duffel14:
Glucuronidase Deconjugation in Inflammation / Kayoko Shimoi ; Tsutomu Nakayama15:
Three-Dimensional Structures of Sulfatases / Debashis Ghosh16:
Estrogen Sulfatase / Masao Iwamori17:
Analysis for Localization of Steroid Sulfatase in Human Tissues / Takashi Suzuki ; Yasuhiro Miki ; Tsuyoshi Fukuda ; Taisuke Nakata ; Takuya Moriya ; Hironobu Sasano18:
Metabolism of Phytoestrogen Conjugates / Tracy L. D'Alessandro ; Brenda J. Boersma-Maland ; T. Greg Peterson ; Jeff Sfakianos ; Jeevan K. Prasain ; Rakesh P. Patel ; Victor M. Darley-Usmar ; Nigel P. Botting ; Stephen Barnes19:
Sulfation and Glucuronidation of Phenols: Implications in Coenzyme Q Metabolism / Nandita Shangari ; Tom S. Chan ; Peter J. O'Brien20:
Synthesis of Bile Acid Coenzyme A Thioesters in the Amino Acid Conjugation of Bile Acids / Erin M. Shonsey ; James Wheeler ; Michelle Johnson ; Donging He ; Charles N. Falany ; Josie Falany21:
Bile Acid Coenzyme A: Amino Acid N-Acyltransferase in the Amino Acid Conjugation of Bile Acids / Mindan Sfakianos ; David J. Merkler22:
Multidrug Resistance Protein 1-Mediated Export of Glutathione and Glutathione Disulphide from Brain Astrocytes / Johannes Hirrlinger ; Ralf Dringen23:
The Genetics of ATP-Binding Cassette Transporters / Michael Dean24:
Functional Analysis of Detergent-solubilized and Membrane-Reconstituted ATP-Binding Cassette Transporters / Bert Poolman ; Mark K. Doeven ; Eric R. Geertsma ; Esther Biemans-Oldehinkel ; Wil N. Konings ; Douglas C. Rees25:
Yeast ATP-Binding Cassette Transporters: Cellular Cleaning Pumps / Robert Ernst ; Robin Klemm ; Lutz Schmitt ; Karl Kuchler26:
High-Speed Screening of Human ATP-Binding Cassette Transporter Function and Genetic Polymorphisms: New Strategies in Pharmacogenomics / Toshihisa Ishikawa ; Aki Sakurai ; Yoichi Kanamori ; Makoto Nagakura ; Hiroyuki Hirano ; Yutaka Takarada ; Kazunari Yamada ; Kazuhisa Fukushima ; Masato Kitajima27:
Coordinate Transcriptional Regulation of Transport and Metabolism / Jyrki J. Eloranta ; Peter J. Meier ; Gerd A. Kullak-Ublick28:
Uptake and Efflux Transporters for Conjugates in Human Hepatocytes / Dietrich Keppler29:
Biliary Transport Systems: Short-Term Regulation / Ralf Kubitz ; Angelika Helmer ; Dieter Haussinger30:
Inborn Errors of Biliary Canalicular Transport Systems / Verena Keitel31:
Epoxide Hydrolases: Structure, Function, Mechanism, and Assay / Michael Arand ; Annette Cronin ; Magdalena Adamska ; Franz Oesch32:
Pregnane X Receptor-Mediated Transcription / Thomas K. H. Chang ; David J. Waxman33:
Animal Models of Xenobiotic Receptors in Drug Metabolism and Diseases / Haibiao Gong ; Michael W. Sinz ; Yan Feng ; Taosheng Chen ; Raman Venkataramanan ; Wen Xie34:
Cancer and Molecular Biomarkers of Phase 2 / Kim Dalhoff ; Kaspar Buus Jensen ; Henrik Enghusen Poulsen35:
Author Index
Subject Index
Contributors to Volume 400
Preface
Volumes in Series
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