| Experimental Tools |
| An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification / T. Hinze ; U. Hatnik ; M. Sturm |
| Towards Optimization ofPCR Protocol in DNA Computing / S. Kashiwamura ; M. Nakatsugawa ; M. Yamamoto ; T. Shiba ; A. Ohuchi |
| DNASequenceGenerator: A Program for the Construction of DNA Sequences / U. Feldkamp ; S. Saghafi ; W. Banzhaf ; H. Rauhe |
| DNA Computing in Microreactors / D. van Noort ; F.-U. Gast ; J.S. McCaskill |
| Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules / R. Penchovsky |
| Theoretical Tools |
| Coding Properties ofDNA Languages / S. Hussini ; L. Kari ; S. Konstantinidis |
| Boundary Components ofThickened Graphs / N. Jonoska ; M. Saito |
| Probabilistic Computational Models |
| Population Computation and Majority Inference in Test Tube / Y. Sakakibara |
| DNA Starts to Learn Poker / D.H. Wood ; H. Bi ; S.O. Kimbrough ; D.-J. Wu ; J. Chen |
| PNA-mediated Whiplash PCR / J.A. Rose ; R.J. Deaton ; M. Hagiya ; A. Suyama |
| Computer Simulation and Sequence Design |
| Biomolecular Computation in Virtual Test Tubes / M.H. Garzon ; C. Oehmen |
| Developing Support System for Sequence Design in DNA Computing / F. Tanaka |
| The Fidelity ofthe Tag-Antitag System |
| PUNCH: An Evolutionary Algorithm for Optimizing Bit Set Selection / A.J. Ruben ; S.J. Freeland ; L.F. Landweber |
| Algorithms |
| Solving Knapsack Problems in a Sticker Based Model / M.J. Perez-Jimenez ; F. Sancho-Caparrini |
| A Clause String DNA Algorithm for SAT / V. Manca ; C. Zandron |
| A Proposal ofDNA Computing on Beads with Application to SAT Problems / T. Yoichi ; H. Akihiro |
| Experimental Solutions |
| Aqueous Solutions ofAlgorithmic Problems: Emphasizing Knights on a 3×3 / T. Head ; X. Chen ; M.J. Nichols ; M. Yamamura ; S. Gal |
| Solutions ofShortest Path Problems by Concentration Control / N. Matsuura ; Y. Kawazoe |
| Another Realization ofAqueous Computing with Peptide Nucleic Acid / Y. Hiroto ; T. Matoba |
| Experimental Conformation ofthe Basic Principles ofLength-only Discrimination / Y. Khodor ; J. Khodor ; T.F. Knight, Jr. |
| Experimental Construction ofVery Large Scale DNA Databases with Associative Search Capability / J.H. Reif ; T.H. LaBean ; M. Pirrung ; V.S. Rana ; B. Guo ; C. Kingsford ; G.S. Wickham |
| Nano-tech Devices |
| Operation ofa Purified DNA Nanoactuator / F.C. Simmel ; B. Yurke |
| DNA Scissors / J.C. Mitchell |
| Biomimetic Tools |
| A Realization ofInformation Gate by Using Enterococcus faecalis Pheromone System / K. Wakabayashi |
| Patterns ofMicronuclear Genes in Ciliates / A. Ehrenfeucht ; T. Harju ; I. Petre ; G. Rozenberg |
| Peptide Computing - Universality and Complexity / M.S. Balan ; K. Krithivasan ; Y. Sivasubramanyam |
| Programmed Mutagenesis Is a Universal Model ofComputation / D.K. Gifford |
| New Computing Models |
| Horn Clause Computation by Self-assembly of DNA Molecules / H. Uejima ; S. Kobayashi |
| DNA-based Parallel Computation ofSimple Arithmetic / H. Hug ; R. Schuler |
| Splicing Systems and Membranes |
| On P Systems with Global Rules / A. Paun |
| Computing with Membranes: Variants with an Enhanced Membrane Handling / M. Margenstern ; C. MartÃn-Vide ; G. Paun |
| Towards an Electronic Implementation ofMembrane Computing: A Formal Description ofNon-deterministic Evolution in Transition P Systems / A.V. Baranda ; F. Arroyo ; J. Castellanos ; R. Gonzalo |
| Insertion-Deletion P Systems / S.N. Krishna ; R. Rama |
| A Universal Time-Varying Distributed H System ofDegree 1 / Y. Rogozhin |
| A Note on Graph Splicing Languages / N.G. David ; K.G. Subramanian ; D.G. Thomas |
| Author Index |
| Experimental Tools |
| An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification / T. Hinze ; U. Hatnik ; M. Sturm |
| Towards Optimization ofPCR Protocol in DNA Computing / S. Kashiwamura ; M. Nakatsugawa ; M. Yamamoto ; T. Shiba ; A. Ohuchi |
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