| Functional Genomics / Part I： |
| Analysis of Gene Function using DNA Microarrays / Andrew P. Capaldi1： |
| An introduction to microarray data analysis and visualization / Gregg B. Whitworth2： |
| Genome-wide approaches to monitor pre-mRNA splicing / Maki Inada ; Jeff Pleiss3： |
| ChIP-Seq: Using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites / Philippe Lefrançois ; Wei Zheng ; Michael Snyder4： |
| Genome-wide mapping of nucleosomes in yeast / Oliver J. Rando5： |
| Genome-wide translational profiling by ribosome footprinting / Nicholas T. Ingolia6： |
| Systematic Genetic Analysis / Part II： |
| Synthetic Genetic Array (SGA) Analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe / Anastasia Baryshnikova ; Michael Costanzo ; Scott Dixon ; Franco J. Vizeacoumar ; Chad L. Myers ; Brenda Andrews ; Charles Boone7： |
| Making temperature-sensitive mutants / Shay Ben-Aroya ; Xuewen Pan ; Jef D. Boeke ; Philip Hieter8： |
| Quantitative Genetic Interaction Mapping using the E-MAP Approach / Sean R. Collins ; Assen Roguev ; Nevan J. Krogan9： |
| Exploring gene function and drug action using chemogenomic dosage assays / Elke Ericson ; Shawn Hoon ; Robert P. St. Onge ; Guri Giaever ; Corey Nislow10： |
| Proteomics / Part III： |
| Yeast Expression Proteomics by High-Resolution Mass Spectrometry / Tobias C. Walther ; Jesper V. Olsen ; Matthias Mann11： |
| High-quality binary interactome mapping / Matija Dreze ; Dario Monachello ; Claire Lurin ; Michael E. Cusick ; David E. Hill ; March Vidal ; Pascal Braun12： |
| Quantitative analysis of protein phosphorylation on a system-wide scale by mass spectrometry based proteomics / Bernd Bodenmiller ; Rudi Aebersold13： |
| A Toolkit of Protein-fragment Complementation Assays for Studying and Dissecting Large-scale and Dynamic Protein-Protein Interactions in Living Cells / Stephen W. Michnick ; Po-Hien Ear ; Christian Landry ; Mohan K. Malleshaiah ; Vincent Messier14： |
| Yeast Lipid Analysis and Quantification by Mass Spectrometry / Xue Li Guan ; Isabelle Riezman ; Markus R. Wenk ; Howard Riezman15： |
| Mass Spectrometry-Based Metabolomics of Yeast / Christopher A. Crutchfield ; Wenyun Lu ; Eugene Melamud ; Joshua D. Rabinowitz16： |
| Systems Analysis / Part IV： |
| Imaging single mRNA molecules in yeast / Hyun Youk ; Arjun Raj ; Alexander van Oudenaarden17： |
| Reconstructing gene histories in Ascomycota fungi / IlanWapinski ; Aviv Regev18： |
| Experimental evolution in yeast: a practical guide / Maitreya J. Dunham19： |
| Synthetic Biology / Part V： |
| Enhancing stress resistance and production phenotypes through transcriptome engineering / Felix H. Lam ; Franz S. Hartner ; Gerald R. Fink ; Gregory Stephanopoulos20： |
| Advances in Cytology/Biochemistry / Part VI： |
| Visualizing yeast chromosomes and nuclear architecture / Peter Meister ; Lutz R. Gehlen ; Elisa Varela ; Veronique Kalck ; Susan M. Gasser21： |
| Quantitative localization of chromosomal loci by immunofluorescence / Donna Garvey Brickner ; William Light ; Jason H. Brickner22： |
| Spinning Disk Confocal Microscopy of Yeast / Kurt Thorn23： |
| Correlative GFP-immunoelectron microscopy in yeast / Christopher Buser ; Kent McDonald24： |
| Analyzing P-bodies and stress granules in Saccharomyces cerevisiae / J Ross Buchan ; Tracy Nissan ; Roy Parker25： |
| Analyzing mRNA expression using single mRNA resolution fluorescent in situ hybridization / Daniel Zenklusen ; Robert H Singer26： |
| The Use of In Vitro Assays to Measure Endoplasmic Reticulum Associated Degradation (ERAD) / Jeffrey L. Brodsky27： |
| A protein transformation protocol for introducing yeast prion Particles into yeast / Motomasa Tanaka28： |
| Overexpression and Purification of Integral Membrane Proteins in Yeast / Franklin A. Hays ; Zygy Roe-Zurz ; Robert M. Stroud29： |
| Biochemical, cell biological and genetic assays to analyze amyloid and prion aggregation in yeast / Simon Alberti ; Randal Halfmann ; Susan Lindquist30： |
| Other Fungi / Part VII： |
| Genetics and Molecular Biology in Candida albicans / Hernday, A.D. ; Noble, S. M. ; Mitrovich, Q.M. ; Johnson, A.D31： |
| Molecular Genetics of Schizosaccharomyces pombe / Sarah A. Sabatinos ; Susan L. Forsburg32： |
| Applying Genetics and Molecular Biology to the Study of the Human Pathogen Cryptococcus neoformans / Cheryl D. Chun ; Hiten D. Madhani33： |
| The Fungal Genome Initiative and lessons learned from genome sequencing / Christina A. Cuomo ; Bruce W. Birren34： |
| Ultradian metabolic cycles in yeast / Benjamin Tu35： |
| Functional Genomics / Part I： |
| Analysis of Gene Function using DNA Microarrays / Andrew P. Capaldi1： |
| An introduction to microarray data analysis and visualization / Gregg B. Whitworth2： |
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