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1.

図書

図書
E.H. Mercer
出版情報: New York : Wiley, c1981  vi, 232 p. ; 24 cm
シリーズ名: A Wiley-Interscience publication
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2.

図書

図書
edited by R.K. Mishra
出版情報: Dordrecht, Netherlands : Kluwer Academic, c1990  x, 298 p. ; 25 cm
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3.

図書

図書
A.R. Peacocke
出版情報: Oxford [Oxfordshire] : Clarendon Press, 1983 , New York : Oxford University Press  xi, 310 p. ; 24 cm
シリーズ名: Oxford science publications
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目次情報: 続きを見る
Introduction / 1:
The Thermodynamics of Dissipative Structures / 2:
Network Thermodynamics / 3:
The Kinetics of Biological Self-Organization / 4:
Selection and Evolution of Biological Macromolecules / 5:
The Interpretation of Biological Complexity / 6:
Introduction / 1:
The Thermodynamics of Dissipative Structures / 2:
Network Thermodynamics / 3:
4.

図書

図書
Scott Camazine ... [et al.] ; original line drawings by William Ristine and Mary Ellen Didion ; StarLogo programming by William Thies
出版情報: Princeton, N.J. : Princeton University Press, 2003, c2001  viii, 538 p., [8] p. of plates ; 24 cm
シリーズ名: Princeton paperbacks
Princeton studies in complexity
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目次情報: 続きを見る
Explanation of Color Plates
Prologue: Aims and Scope of the Book
Introduction to Biological Self-Organization / Part I:
What Is Self-Organization? / Chapter 1:
How Self-Organization Works / Chapter 2:
Characteristics of Self-Organizing Systems / Chapter 3:
Alternatives to Self-Organization / Chapter 4:
Why Self-Organization? / Chapter 5:
Investigation of Self-Organization / Chapter 6:
Misconceptions about Self-Organization / Chapter 7:
Case Studies / Part II:
Pattern Formation in Slime Molds and Bacteria / Chapter 8:
Feeding Aggregations of Bark Beetles / Chapter 9:
Synchronized Flashing among Fireflies / Chapter 10:
Fish Schooling / Chapter 11:
Nectar Source Selection by Honey Bees / Chapter 12:
Trail Formation in Ants / Chapter 13:
The Swarm Raids of Army Ants / Chapter 14:
Colony Thermoregulation in Honey Bees / Chapter 15:
Comb Patterns in Honey Bee Colonies / Chapter 16:
Wall Building by Ants / Chapter 17:
Termite Mound Building / Chapter 18:
Construction Algorithms in Wasps / Chapter 19:
Dominance Hierarchies in Paper Wasps / Chapter 20:
Conclusions / Part III:
Lessons, Speculations, and the Future of Self-Organization / Chapter 21:
Notes
References
Index
Explanation of Color Plates
Prologue: Aims and Scope of the Book
Introduction to Biological Self-Organization / Part I:
5.

図書

図書
edited by Pengcheng Fu, Sven Panke
出版情報: Hoboken, N.J. : John Wiley & Sons, c2009  xiii, 658 p. ; 25 cm
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目次情報: 続きを見る
Foreword
Contributors
Introduction / Pengcheng Fu1:
Basics of Molecular Biology, Genetic Engineering, and Metabolic Engineering / Michael X. Wang ; Huidong Shi2:
High-Throughput Technologies and Functional Genomics / Xiu-Feng Wan ; Dorothea K. Thompson3:
Genomic Signal Processing of DNA Microarray Data for the Enhanced Prediction of Axillary Lymph Node Status of Breast Cancer Tumors / Gordon S. Okimoto4:
Recombinant Genomes: Novel Resources for Systems Biology and Synthetic Biology / Mitsuhiro Itaya5:
In silico Genome-Scale Metabolic Models: The Constraint-Based Approach and its Applications / Andrew R. Joyce ; Bernhard Ø. Palsson6:
Mathematical Modeling of Genetic Regulatory Networks: Stress Responses in Escherichia coli / Delphine Ropers ; Hidde de Jong ; Johannes Geiselmann7:
Synthetic Life: Ethobricks for a New Biology / Jordi Vallverdú ; Claes Gustafsson8:
Yeast as a Prototype for Systems Biology / Goutham Vemuri ; Jens Nielsen9:
Construction and Applications of Genome-Scale in silico Metabolic Models for Strain Improvement / Sang Yup Lee ; Jin Sik Kim ; Hongseok Yun ; Tae Yong Kim ; Seung Bum Sohn ; Hyun Uk Kim10:
Synthetic Biology: Putting Engineering into Bioengineering / Matthias Heinemann ; Sven Panke11:
Rationales of Gene Design and de novo Gene Construction / Marcus Graf ; Thomas Schoedl ; Ralf Wagner12:
Self-Replication in Chemistry and Biology / Philipp Holliger ; David Loakes13:
The Synthetic Approach for Regulatory and Metabolic Circuits / Wilson W. Wong ; James C. Liao14:
Synthetic Gene Networks / David Greber ; Martin Fussenegger15:
The Theory of Biological Robustness and its Implication to Cancer / Hiroaki Kitano16:
Nucleic Acid Engineering / Wenlong Cheng ; Liang Ding ; Hisakage Funabashi ; Nokyoung Park ; Soong Ho Um ; Jianfeng Xu ; Dan Luo17:
Potential Applications of Synthetic Biology in Marine Microbial Functional Ecology and Biotechnology / Guangyi Wang ; Juanita Mathews18:
On Fundamental Implications of Systems and Synthetic Biology / Cliff Hooker19:
Outstanding Issues in Systems and Synthetic Biology / 20:
Index
Foreword
Contributors
Introduction / Pengcheng Fu1:
6.

図書

図書
edited by M. Buchanan ... [et al.]
出版情報: Cambridge [England] : Cambridge University Press, 2010  x, 271 p. ; 26 cm
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目次情報: 続きを見る
List of contributors
Introduction / M. Buchanan ; G. Caldarelli ; P. De Los Rios ; F. Rao ; M. Vendruscolo
Network views of the cell / Paolo De Los Rios ; Michele Vendruscolo1:
The network hypothesis / 1.1:
The central dogma and gene regulatory networks / 1.2:
Protein-protein interaction networks / 1.3:
Metabolic networks / 1.4:
Signaling networks / 1.5:
Networked networks and cell functionality / 1.6:
Concluding remarks / 1.7:
Transcriptional regulatory networks / Sarath Chandra Janga ; M. Madan Babu2:
Transcriptional regulation in prokaryotes and eukaryotes / 2.1:
Structure of transcriptional regulatory networks / 2.3:
Evolution of transcriptional regulatory networks / 2.4:
Dynamics of transcriptional regulatory networks / 2.5:
Conclusions / 2.6:
Transcription factors and gene regulatory networks / Matteo Brilli ; Elisa Calistri ; Pietro Lió3:
Promoters' complexity/eukaryotic gene promoters / 3.1:
Transcription factors / 3.3:
Bioinformatics of regulatory networks / 3.4:
Experimental methods for protein interaction identification / Peter Uetz ; Björn Titz ; Seesandra V. Rajagopala ; Gerard Cagney4:
Protein complementation techniques / 4.1:
Affinity purification methods / 4.3:
Protein complex purification and mass spectrometry / 4.4:
Protein and peptide chips / 4.5:
Other methods for interaction detection and functional analysis / 4.6:
Quality of large-scale interaction data / 4.7:
Comparison of methods / 4.8:
Modeling protein interaction networks / Francesco Rao4.9:
Scaling laws and network topology / 5.1:
Predicting protein interactions / 5.3:
Towards models at an atomic level of resolution / 5.4:
Dynamics and evolution of metabolic networks / Daniel Segrè5.5:
Cellular metabolism and its regulation / 6.1:
Metabolism across disciplines / 6.3:
Dynamics of a metabolic system / 6.4:
Stoichiometric analysis / 6.5:
Constraint-based modeling: feasible states and optimality / 6.6:
Predicting genetic perturbations / 6.7:
Double perturbations and epistatic interactions / 6.8:
The ancient history of metabolism: from cell-scale to biosphere-scale / 6.9:
Hierarchical modularity in biological networks: the case of metabolic networks / Erzsébet Ravasz Regan6.10:
Modularity and hubs in biological networks / 7.1:
Scaling of the clustering coefficient: a signature of hierarchy / 7.3:
Method for finding network modules / 7.4:
A case study: the E. coli metabolic network / 7.5:
Hierarchy, fractality and the small world of networks / 7.6:
Signalling networks / Gian Paolo Rossini7.7:
Chemical signalling: many pathways following a few general themes / 8.1:
Cross-talks among signal transduction pathways / 8.3:
Signalling networks, system organization and modelling / 8.4:
Conclusions and outlook / 8.5:
Complex networks: from local to global properties / D. GarlaschelliAppendix A:
Modelling the local structure of networks / Appendix B:
Higher-order topological properties / S. Ahnert ; T. FinkAppendix C:
Elementary mathematical concepts / A. GabrielliAppendix D:
References
Index
List of contributors
Introduction / M. Buchanan ; G. Caldarelli ; P. De Los Rios ; F. Rao ; M. Vendruscolo
Network views of the cell / Paolo De Los Rios ; Michele Vendruscolo1:
7.

図書

図書
J. Ricard
出版情報: Amsterdam ; Tokyo : Elsevier, 2006  xvii, 277 p. ; 25 cm
シリーズ名: New comprehensive biochemistry / general editors, A. Neuberger, L.L.M. van Deenen ; v. 40
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8.

図書

図書
James Grier Miller
出版情報: New York : McGraw-Hill, c1978  xli, 1102 p., [8] leaves of plates ; 24 cm
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9.

電子ブック

EB
edited by Zoltan Szallasi, Jörg Stelling, Vipul Periwal
出版情報: Cambridge, Mass. ; London : MIT Press, c2006  1 online resource (xiv, 448 p.)
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目次情報: 続きを見る
Preface
General Concepts / I:
The Role of Modeling in Systems Biology / Douglas B. Kell ; Joshua D. Knowles1:
Complexity and Robustness of Cellular Systems / Jorg Stelling ; Uwe Sauer ; Francis J. Doyle III ; John Doyle2:
On Modules and Modularity / Zoltan Szallasi ; Vipul Periwal3:
Modeling Approaches / II:
Bayesian Inference of Biological Systems: The Logic of Biology / 4:
Stoichiometric and Constraint-based Modeling / Steffen Klamt5:
Modeling Molecular Interaction Networks with Nonlinear Ordinary Differential Equations / Emery D. Conrad ; John J. Tyson6:
Qualitative Approaches to the Analysis of Genetic Regulatory Networks / Hidde de Jong ; Delphine Ropers7:
Stochastic Modeling of Intracellular Kinetics / Johan Paulsson ; Johan Elf8:
Kinetics in Spatially Extended Systems / Karsten Kruse9:
Models And Reality / III:
Biological Data Acquisition for System Level Modeling-An Exercise in the Art of Compromise / 10:
Methods to Identify Cellular Architecture and Dynamics from Experimental Data / Rudiyanto Gunawan ; Kapil G. Gadker11:
Using Control Theory to Study Biology / Brian P. Ingalls ; Tau-Mi Yi ; Pablo A. Iglesias12:
Synthetic Gene Regulatory Systems / Mads Kaern ; Ron Weiss13:
Multilevel Modeling in Systems Biology: From Cells to Whole Organs / Denis Noble14:
Computational Modeling / IV:
Computational Constraints on Modeling in Systems Biology / 15:
Numerical Simulation for Biochemical Kinetics / Daniel T. Gillespie ; Linda R. Petzold16:
Software Infrastructure for Effective Communication and Reuse of Computational Models / Andrew Finney ; Michael Hucka ; Benjamin J. Bornstein ; Sarah M. Keating ; Bruce E. Shapiro ; Joanne Matthews ; Ben L. Kovitz ; Maria J. Schilstra ; Akira Funahashi ; Hiroaki Kitano17:
A Software Tools for Biological Modeling
References
Contributors
Index
Preface
General Concepts / I:
The Role of Modeling in Systems Biology / Douglas B. Kell ; Joshua D. Knowles1:
10.

電子ブック

EB
edited by Robert Levin ... [et al.]
出版情報: Cambridge, Mass. ; London : MIT Press, c2011  1 online resource (xv, 249 p.)
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