| Message from the General Chair |
| BIBE 2003 Program Committee |
| Protein Structures and Pathways / Bioinfo-1： |
| A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale / M. Shah ; S. Passovets ; D. Kim ; K. Ellrott ; L. Wang ; I. Vokler ; P. LoCascio ; D. Xu ; Y. Xu |
| A Fast Algorithm for RNA Secondary Structure Prediction Including Pseudoknots / F. Tahi ; S. Engelen ; M. Regnier |
| Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data / Y. Chen ; T. Joshi |
| Prediction of Contact Maps Using Support Vector Machines / Y. Zhao ; G. Karypis |
| Biomedical Data Engineering / Bioeng-1： |
| Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site and Disulfide Bond Recognition / P. Clote |
| Analysis of Atlantic Salmon Skin Mucus: COPS--A Computer-Based System for Protein Pattern Analysis of 1D SDS-PAGE Gels / R. Eibrand ; P. Kennedy ; D. Cotter ; U. MacEvilly ; B. Wu |
| An Open Multiple Instance Learning Framework and Its Application in Drug Activity Prediction Problems / X. Huang ; S.-C. Chen ; M.-L. Shyu |
| Analysis of Spontaneous Activity in Cultured Brain Tissue Using the Discrete Wavelet Transform / J. D. Johnson ; D. Plenz ; J. Beggs ; W. Li ; M. Mieier ; N. Miltner ; K. Owen |
| Phylogenetic Tress / Bioinfo-2： |
| An Empirical Comparison of Tools for Phylogenetic Footprinting / M. Blanchette ; S. Kwong ; M. Tompa |
| An Investigation of Phylogenetic Likelihood Methods / T. L. Williams ; B. M. E. Moret |
| Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metric / J. Bluis ; D.-G. Shin |
| A Collapsing Method for the Efficient Recovery of Optimal Edges in Phylogenetic Trees / M. Hu ; P. Kearney ; J. Badger |
| Medical Image Processing I / Bioeng-2： |
| Comparison of Bicubic and Bezier Polynomials for Surface Parameterization in Volumetric Images / F. Quek ; V. Kulkarni ; C. Kirbas |
| Evolving Bubbles for Prostate Surface Detection from TRUS Images / F. Shao ; L. V. Ling ; W. S. Ng |
| Structure-Trageting Fast Magnetic Resonance Imaging Angiography with Partial Collection of the Inverse Space (k-Space) Based on the Orientation of the Vessel in Real Space / D. Gui ; N. V. Tsekos |
| Respiratory Gating for MRI and MRS in Rodents (Short Paper) / J. R. Garbow ; J. P. Dugas ; M. S. Conradi |
| Bio-Databases I / Bioinfo-3： |
| A Novel Laboratory Version Management System for Tracking Complex Biological Experiments / W. M. Shui ; N. Lam ; R. K. Wong |
| Requirements of Phylogenetic Databases / L. Nakhleh ; D. Miranker ; F. Barbancon ; W. H. Piel ; M. Donoghue |
| Filtration of String Proximity Search via Transformation / S. A. Aghili ; D. Agrawal ; A. El Abbabi |
| GenoMosaic: On-Demand Multiple Genome Comparison and Comparative Annotation / C. Gibas ; D. Sturgill ; J. Weller |
| Biomedical Imaging, Signaling, and Computation / Bioeng-3： |
| Automatic Detection of Premature Ventricular Contraction Using Quantum Neural Networks / J. Zhou |
| Vessel Extraction in Medical Images by 3D Wave Propagation and Traceback / F. K. H. Quek |
| A New Approach to Detect Similar Proteins from 2D Gel Electrophoresis Images / N. Khan ; S. Rahman |
| A Robotic Device for Minimally Invasive Breast Interventions with Real-Time MRI Guidance / B. T. Larson ; A. G. Erdman |
| Sequences and Searching / Bioinfo-4： |
| An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level / F.-X. Wu ; W.-J. Zhang ; A. J. Kusalik |
| A Model of Random Sequences for de novo Peptide Sequencing / K. D. Jarman ; W. R. Cannon ; K. H. Jarman ; A. Heredia-Langner |
| Performance Comparison of Algorithms for Finding Transcription Factor Binding Sites / S. Sinha |
| Medical Image Processing II / Bioeng-4： |
| Determining the Asymmetries of Skin Lesions with Fuzzy Borders / V. T. Y. Ng ; T. Lee ; B. Y. M. Fung |
| Unsupervised Iterative Segmentation and Recognition of Anatomic Structures in Medical Imagery Using Second-Order B-Spline Descriptors and Geometric Quasi-Invariants / T. A. El Doker |
| Vessel Extraction Techniques and Algorithms: A Survey |
| Prostate Gland and Extra-Capsular Tissue 3D Reconstruction and Measurement (Short Paper) / F. McKenzie ; R. Hussein ; J. Seevinck ; P. Schellhammer ; J. Diaz |
| Bio-Databases II / Bioinfo-5： |
| Empirical Evaluation of Ensemble Feature Subset Selection Methods for Learning from a High-Dimensional Database in Drug Design (Short Paper) / H. Mamitsuka |
| Streamlining Biological Data Analysis Using BioFlow (Short Paper) / Z. Guan ; H. M. Jamil |
| BioSeek: Exploiting Source-Capability Information for Integrated Access to Multiple Bioinformatics Data Sources (Short Paper) / L. Liu ; D. Buttler ; T. Critchlow ; W. Han ; H. Paques ; C. Pu ; D. Rocco |
| Biological Systems and Models / Bioeng-5： |
| A Computational Model of the Role of Deficit-Related Drives in Sequential Movement Learning in a T-Maze Environment (Abstract) |
| A Biological Mapping of a Learned Avoidance Behavior Model to the Basal Ganglia (Short Paper) / K. M. Biddell ; J. Li |
| Influence of the Thermal Treatment Applied to PAN Gel on Its Length Change and Generated Force (Short Paper) / H. Tamagawa ; F. Nogata ; T. Watanabe ; A. Abe ; S. Popovic |
| Panel |
| Bioinformatics and Biotechnology Research Issues |
| Gene Expressions / Bioinfo-6： |
| Analyzing the Escherichia coli Gene Expression Data by a Multilayer Adjusted Tree Organizing Map / N. Wei ; L. Gruenwald ; T. Conway |
| A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome / H. Huang ; H. Chang ; T. Tsou ; B. Liu ; C.-Y. Kao ; J. Horng |
| Time Series Analysis of Gene Expression and Location Data / C.-H. Yeang ; T. Jaakkola |
| Regulating Gene Expression Using Optimal Control Theory / Y. Liu ; H. B. Sun ; H. Yokota |
| Clustering Algorithms and Molecular Structures / Bioinfo-7： |
| Enhanced Biclustering on Expression Data / J. Yang ; H. Wang ; W. Wang ; P. Yu |
| Hierarchical Clustering of Gene Expression Data / F. Luo ; K. Tang ; L. Khan |
| MotifMiner: A General Toolkit for Efficiently Identifying Common Substructures in Molecules / M. Coatney ; S. Parthasarathy |
| Augmenting SSEs with Structural Properties for Rapid Protein Structure Comparison / C.-H. Chionh ; Z. Huang ; K.-L. Tan ; Z. Yao |
| Bio-Databases III / Bioinfo-8： |
| Load Balancing: A Case Study of a Pharmaceutical Drug Candidate Database / Z. Ben Miled ; S. Li ; J. Martin ; C. Balagoplakrishna ; O. Bukhres ; R. J. Oppelt |
| Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases / O. Ozturk ; H. Ferhatosmanoglu |
| Application of XML Schema and Active Rules System in Management and Integration of Heterogeneous Biological Data |
| An Assessment of a Metric Space Database Index to Support Sequence Homology / R. Mao ; W. Xu ; N. Singh ; D. P. Miranker |
| Clustering Algorithms / Bioinfo-9： |
| Detecting Experimental Noises in Protein-Protein Interactions with Iterative Sampling and Model-Based Clustering |
| DHC: A Density-Based Hierarchical Clustering Method for Time Series Gene Expression Data / D. Jiang ; J. Pei ; A. Zhang |
| Determination of the Minimum Sample Size in Microarray Experiments to Cluster Genes Using K-Means Clustering |
| A Repulsive Clustering Algorithm for Gene Expression Data (Short Paper) / C.-S. Cheng ; S.-S. Wang |
| Prediction, Simulation and Mining Models / Bioinfo-10： |
| Combining Few Neural Networks for Effective Secondary Structure Prediction / K. S. Guimaraes ; J. C. B. Melo ; G. D. C. Cavalcanti |
| Uses of Multiagents Systems for Simulation of MAPK Pathway (Short Paper) / G. Querrec ; V. Rodin ; J. F. Abgrall ; S. Kerdelo ; J. Tisseau |
| A Framework for Cancer-Related Genes Mining over the Internet / J. J. P. Tsai ; J. G. Chang ; S. H. Shih ; R. M. Chen ; H. W. Hsiao ; R. M. Hu ; S. N. Chen ; M. M. Lee ; F. M. Liu ; W. L. Chan |
| Predictive Model for Yeast Protein Functions Using Modular Neural Approach (Short Paper) / D. Hwang ; F. Fotouhi ; R. L. Filey, Jr. ; W. I. Grosky |
| Author Index |
| Message from the General Chair |
| BIBE 2003 Program Committee |
| Protein Structures and Pathways / Bioinfo-1： |
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