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1.

図書

図書
edited by G.H. Bourne, J.F. Danielli ; assistant editor, K.W. Jeon
出版情報: New York : Academic Press, 1978  ix, 357 p. ; 24 cm
シリーズ名: International review of cytology / edited by G.H. Bourne, J. F. Danielli ; Supplement 8
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2.

図書

図書
edited by Klaus M. Herrmann, Ronald L. Somerville
出版情報: Reading, Mass. : Addison-Wesley Pub. Co., Advanced Book Program, 1983  xx, 453 p. ; 24 cm
シリーズ名: Biotechnology series ; 3
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3.

図書

図書
Norman Maclean
出版情報: London ; New York : Academic Press, 1976  xi, 348 p. ; 24 cm
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4.

図書

図書
editor, Takis S. Papas
出版情報: Woodlands, Tex. : Portfolio Pub. Co. , Houston : Gulf Pub. Co., Book Division, c1990  xiii, 343 p. ; 24 cm
シリーズ名: Advances in applied biotechnology series ; v. 6
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5.

図書

図書
Mark Ptashne, Alexander Gann
出版情報: Cold Spring Harbor, N.Y. : Cold Spring Harbor Laboratory Press, c2002  xvi, 192 p. ; 24 cm
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目次情報: 続きを見る
Preface
Foreword
Introduction
Lessons from Bacteria / Chapter 1:
Rna Polymerase
Regulated Recruitment: The lac Genes
Protein-DNA Interactions
Detecting Physiological Signals
Promoter Recognition and Transcription by RNA Polymerase
Switching the Genes On: Activation by CAP
Cooperative Binding of Proteins to DNA
Cooperative Binding and Gene Activation by CAP
Repression by Lac Repressor
Interim Summary and Extension
More Regulated Recruitment: The Bacteriophage [lambda]
The Switch
Establishing Lysogeny
Analogies with lac
Promoters
Repression
Activation
Making an Efficient Switch
Cooperative Binding of [lambda] Repressor to DNA
Autogenous Control by Repressor
Panel: Antitermination: N and Q
Interim Summary and Extensions
Activation: A Closer Look
DNA binding: A Closer Look
Synergy
Polymerase Activation: glnA and Related Genes
Promoter Recognition by [sigma superscript 54]-containing Polymerase
DNA Binding by NtrC
Detecting the Physiological Signal
Activation by NtrC
Other Activators of [sigma superscript 54] Polymerase
Interim Summary
Panel: Phage T4 Late Genes
Promoter Activation: merT and Related Genes
Promoter Recognition
Detecting the Physiological Signal and Activation
General Summary
Panel: More on Repression in Bacteria
Footnotes
Bibliography
Yeast: A Single-celled Eukaryote / Chapter 2:
Other Parts of the Transcriptional Machinery
An Overview of Activation
A Model Case: The Gal Genes
Overview of Regulation of a GAL Gene
Specific DNA Binding
How Gal4 Works
Separate DNA-binding and Activating Regions of Gal4
Activating Region Structure
Independent Mutations Can Increase Activator Strength Additively When Combined
Activating Regions Work with an Efficiency Proportional to Their Lengths
Activating Region-Target Interactions Tolerate Sequence Changes
New Activating Regions Are Easily Generated
Squelching
Recruitment Visualized
Activator Bypass Experiments
Activation by a Heterologous Protein-Protein Interaction
Direct Tethering of the Transcriptional Machinery
Panel: Activator Bypass Experiments
How does Gal4 Recruit Polymerase?
Nucleosomes and Their Modifiers
Targets of Gal4: Experiments Performed In Vitro
Action of Gal4: Experiments Performed In Vivo
What Is Required for Activation?
What Appears at the Gene Upon Activation?
Imposing a Need for Nucleosome Modifiers
Weakening the Gal4-binding Sites or the Gal4-activating region
Cell-cycle Stage-dependent Requirement for Nucleosome Modifiers
Activation: An Interim Summary
Repression by Mig1
Signal Integration and Combinatorial Control
Cooperative Binding with Alternative Partners
Sequential Binding of Activators
Silencing
Heterochromatic Chromosomal Regions
Compartmentalization
Panel: Variegation Visualized
Panel: Epigenetics
DNA Looping
Summary
Some Notes on Higher Eukaryotes / Chapter 3:
Mechanism of Activation: Recruitment
What is Recruited?
Transcriptional Machinery and Promoters
Nucleosomal Templates
Targets
The Human Interferon-[beta] Gene
The Drosophila HSP70 Gene
Detecting and Transmitting Physiological Signals
Transport Into and Out of the Nucleus
Phosphorylation of Inhibitor or Activator in the Nucleus
Panel: Transport-dependent Proteolysis: The Case of SREBP
Allosteric Change of DNA-bound Activator
Signal Integration, Combinatorial Control, and Alternative Enhancers
The Human Interferon-[beta] Enhancer
The Drosophila eve Gene
Action at a Distance
Dna Methylation, Insulators, and Imprinting
Chromosomal Position and Gene Expression
Overview
Enzyme Specificity and Regulation / Chapter 4:
Ubiquitylation and Proteolysis
Splicing
Imposing Specificity on Kinases
Cyclin-dependent Kinases
Transcriptional Antitermination by TAT
Cytokine Receptors and Signaling through STATs
Growth Factor Receptors
Kinases
Phosphatases
Interpreting Signals
Further Generalizations
Dangers
Interpreting Experiments
Benefits
Afterword
Appendices
More on Cooperativity / Appendix 1:
Topogenic Sequences / Appendix 2:
All-or-none Effects and Levels of Gene Expression / Appendix 3:
Index
Preface
Foreword
Introduction
6.

図書

図書
edited by Steven L. McKnight, Keith R. Yamamoto
出版情報: Plainview, N.Y. : Cold Spring Harbor Laboratory Press, 1992  2 v.(xii, 1334 p.) ; 24 cm
シリーズ名: Cold Spring Harbor monograph series ; 22
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7.

図書

図書
editors, R.S. Sohal, Linda S. Birnbaum, Richard G. Cutler
出版情報: New York : Raven Press, c1985  xiv, 351 p. ; 24 cm
シリーズ名: Aging ; v. 29
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8.

図書

図書
by Mark Ptashne
出版情報: Cambridge, Mass. : Cell Press & Blackwell Scientific Publications, 1987, c1986  x, 128 p. ; 23 cm
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9.

図書

図書
edited by G.V. Shivashankar
出版情報: Burlington, Mass. : Academic Press, 2010  xiii, 378 p., [8] p. of plates ; 25 cm
シリーズ名: Methods in cell biology / edited by David M. Prescott ; v. 98
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Cell Nucleus: Organization & MechanoBiology / Section-A:
Fluorescence Fluctuation Microscopy to reveal 3D-Architecture and Function in the Cell Nucleus / Thorsten Lenser1,2 ; Klaus Weisshart2 ; Tobias Ulbricht3 ; Karolin Klement3 ; Peter Hemmerich
Studying histone modifications and their genomic functions by employing chromatin immunoprecipitation and immunoblotting / Ranveer S. Jayani ; Praveena L. Ramanujam ; Sanjeev Galande
Dynamic organization of chromatin assembly & transcription factories in living cells / Bidisha Sinha ; Dipanjan Bhattacharya ; Deepak Kumar Sinha ; Shefali Talwar ; Shovamayee Maharana ; Soumya Gupta ; G. V.Shivashankar
Manipulation & Isolation of Single Cells & Nuclei / Swee Jin Tan ; Qingsen Li ; Chwee Teck Lim
Beyond lamins: other structural components of the nucleoskeleton / Zhixia Zhong ; Katherine L. Wilson ; Kris Noel Dahl
Altered mechanical properties of the nucleus in disease / Maria Lucia Lombardi ; Jan Lammerding
Theoretical concepts and models of cellular mechanosensing / Rumi De ; Assaf Zemel ; Samuel A. Safran
Impact of Nuclear Mechanics on Function / Section-B:
Mechanical Induction of Gene Expression in Connective Tissue Cells / Mathew Chan ; Boris Hinz ; Christopher A. McCulloch
Physical plasticity of the Nucleus and its manipulation / Irena Ivanovska ; Joe Swift ; Takamasa Harada ; J. David Pajerowski ; Dennis E. Discher
Prestressed Nuclear Organization in Living Cells / Aprotim Mazumder ; Roopa T. ; Abhishek Kumar ; K.Venkatesan Iyer ; Nisha M Ramdas
Nanotopography/mechanical induction of stem-cell differentiation / Evelyn Yim
Mechanical Induction in Embryonic Development and Tumour Growth: Integrative Cues through Molecular to Multi-cellular Interplay, and Evolutionary Perspectives / Maria-Elena Fernandez-Sanchez ; Fanny Serman ; Padra Ahmadi ; Emmanuel Farge
Informatics based analysis of mechanosignaling in the laminopathies / Frank P.L. Lai ; Radfidah A. Mutalif ; Siew Cheng Phua ; Colin L. Stewart
Autosomal Dominant Leukodystrophy caused by lamin B1 duplications: A clinical and molecular case study of altered nuclear function and disease / Quasar Saleem Padiath ; Ying-Hui Fu
Cell Nucleus: Organization & MechanoBiology / Section-A:
Fluorescence Fluctuation Microscopy to reveal 3D-Architecture and Function in the Cell Nucleus / Thorsten Lenser1,2 ; Klaus Weisshart2 ; Tobias Ulbricht3 ; Karolin Klement3 ; Peter Hemmerich
Studying histone modifications and their genomic functions by employing chromatin immunoprecipitation and immunoblotting / Ranveer S. Jayani ; Praveena L. Ramanujam ; Sanjeev Galande
10.

図書

図書
Eric Davidson
出版情報: Burlington, MA : Academic Press, c2006  xi, 289 p. ; 24 cm
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Preface
The "Regulatory Genome" for Animal Development / Chapter 1:
The Framework
The Regulatory Apparatus Encoded in the DNA
Genomes, Genes, and Genomic "Space"
Overview of Regulatory Architecture
Gene Regulatory Networks
The Regulatory Demands of Development
Readout and Generation of Regulatory Information in Developmental Specification
Spatial Gene Expression
From Regional Specification to Terminal Differentiation
Evolution, Development, and the Regulatory Genome
cis-Regulatory Modules, and the Structure/Function Basis of Regulatory Logic / Chapter 2:
General Operating Principles
Modularity, A General Property of Genomic cis-Regulatory Control Units
Inside the cis-Regulatory Module: Logic Processing and Input/Output Relations
cis-Regulatory Logic Processors: Examples
Target Site Occupancy and Transcriptional Output
Generalization: The Combinatorial cis-Regulatory Logic Code
cis-Regulatory Design
Integration of Spatial Inputs at the cis-Regulatory Level
Repression and the Diversity of cis-Regulatory Design
cis-Regulatory Design and the Creation of Spatial Complexity in Development
Control by Sequence-Specific Interactions Among Distant cis-Regulatory Elements
Development and BTA Specificity
Control Functions of Sequence-Specific, Intra- and Intergenic Genomic Looping
Development as a Process of Regulatory State Specification / Chapter 3:
Developmental Processes of the Pregastrular Embryo
Vectorial Embryogeniss
Maternal Anisotropy and External Cues for Axial Polarity
Spatial Regulatory Complexity and Interblastomere Signaling
Territories
Comparative View of Embryonic Processes, and the Organization of the Underlying Gene Regulatory Networks
Shallow Gene Regulatory Networks of Type 1 Embryos
More Complex Forms of Embryonic Process
Regulatory State and Network Circuitry in Building Adult Body Parts
Steps in the Postembryonic Developmental Process
The Progenitor Field Concept
Subdivision of the Progenitor Field Regulatory State
Body Plan Development and the Organism
Gene Regulatory Networks for Development: What They Are, How They Work, and What They Mean / Chapter 4:
General Structural Properties of Developmental Gene Regulatory Networks
Overall Network Structure
Gene Regulatory Networks from Different Perspectives: Subcircuits to Process Diagrams
Qualitative Diversity of Network Components
Extensions
Gene Regulatory Networks for Embryonic Development
The Sea Urchin Endomesoderm Network
Regulatory Gene Network for Specification of Mesoderm in the Xenopus Embryo
Gene Regulatory Network Controlling Dorsal-Ventral Territorial Specification in the Drosophila Embryo
Networks that Control Construction of Components of Adult Body Parts
Network Organization in the Specification of Pancreatic [beta]-Cells
Cell Fate Exclusion by microRNAs in a Gene Regulatory Controlling Terminal Differentiation in C. elegans Taste Network Neurons
Concluding Remarks
Gene Regulatory Networks: The Roots of Causality and Diversity in Animal Evolution / Chapter 5:
Evolutionary Implications of the Structure and Function of Gene Regulatory Networks
The Parts of Gene Regulatory Networks, and the Qualities of Evolutionary Change
Linnaean Framework for the Evolutionary Consequences of Alterations in Gene Regulatory Networks
Bilaterian Kernels, Predicted and Real
Caveats and a Caution
Regional Specification in the Bilaterian Nervous System
The Bilaterian Gut
A Possible Pan-Bilaterian Kernel Underlying Specification of the Heart Progenitor Field
Distribution of Kernels
Subphyletic Evolution of Bilaterian Body Plans: hox Genes as Sources of Labile Network Input/Output Switches
Diverse Functional Consequences of hox Gene Expression
Multiple Examples: Regional Repression and Installation of Patterning Output, and the Evolutionary Diversification of Body Parts
hox Gene Subnetworks and Spatial Evolution
Metazoan Origins and Gene Networks Before Kernels
"Deconstructing" Bilaterian Gene Regulatory Networks in Time
Concluding Reflection: The Principle of Animal Development and Evolution
References
Figure Citations
Index
Preface
The "Regulatory Genome" for Animal Development / Chapter 1:
The Framework
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