Preface / Volume 1: |
List of Contributors |
Introduction / Part 1: |
Bioinformatics -- From Genomes to Therapies / Thomas Lengauer1: |
Sequencing Genomes / Part 2: |
Bioinformatics Support for Genome-Sequencing Projects / Knut Reinert ; Daniel Huson2: |
Sequence Analysis / Part 3: |
Sequence Alignment and Sequence Database Search / Martin Vingron3: |
Phylogeny Reconstruction / Ingo Ebersberger, Arndt von Haeseler ; Heiko A. Schmidt4: |
Finding Protein-coding Genes / David C. Kulp5: |
Analyzing Regulatory Regions in Genomes / Thomas Werner6: |
Finding Repeats in Genome Sequences / Brian J. Haas ; Steven L. Salzberg7: |
Analyzing Genome Rearrangements / Guillaume Bourque8: |
Molecular Structure Prediction / Part 4: |
Predicting Simplified Features of Protein Structure / Dariusz Przybylski ; Burkhard Rost9: |
Homology Modeling in Biology / Medicine ; Roland L. Dunbrack, Jr10: |
Protein Fold Recognition Based on Distant Homologs / Ingolf Sommer11: |
De Novo Structure Prediction: Methods / Applications ; Richard Bonneau12: |
Structural Genomics / Philip E. Bourne ; Adam Godzik13: |
RNA Secondary Structures / Ivo L. Hofacker ; Peter F. Stadler14: |
RNA Tertiary Structure Prediction / Fran??ois Major ; Philippe Thibault15: |
Analysis of Molecular Interactions / Volume 2: |
Docking and Scoring for Structure-based Drug Design / Matthias Rarey, J??rg Degen ; Ingo Reulecke16: |
Modeling Protein-Protein and Protein-DNA Docking / Andreas Hildebrandt, Oliver Kohlbacher ; Hans-Peter Lenhof17: |
Lead Identification by Virtual Screening / Andreas K??mper, Didier Rognan18: |
Efficient Strategies for Lead Optimization by Simultaneously Addressing Affinity, Selectivity and Pharmacokinetic Parameters / Karl-Heinz Baringhaus and Hans Matter19: |
Molecular Networks / Part 6: |
Modeling and Simulating Metabolic Networks / Stefan Schuster ; David Fell20: |
Inferring Gene Regulatory Networks / Michael Q. Zhang21: |
Modeling Cell Signaling Networks / Anthony Hasseldine, Azi Lipshtat, Ravi Iyengar ; Avi Ma'ayan22: |
Dynamics of Virus-Host Cell Interaction / Udo Reichl ; Yury Sidorenko23: |
Analysis of Expression Data / Part 7: |
DNA Microarray Technology and Applications - An Overview / John Quackenbush24: |
Low-level Analysis of Microarray Experiments / Wolfgang Huber ; Anja von Heydebreck25: |
Classification of Patients / Claudio Lottaz, Dennis Kostka ; Rainer Spang26: |
Classification of Genes / J??rg Rahnenf??hrer27: |
Proteomics: Beyond cDNA / Patricia M. Palagi ; Yannick Brunner ; Jean-Charles Sanchez ; Ron D. Appel28: |